BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487778
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09620.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 2313 0.0
> AT5G09620.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr5:2983449-2985435 REVERSE LENGTH=1987
Length=1987
Score = 2313 bits (1252), Expect = 0.0
Identities = 1641/1815 (90%), Gaps = 82/1815 (5%)
Strand=Plus/Plus
Query 1 TTCATGGATTGAGCAAAGAAGAGGAAGATAATATCCAAAATATCGCCAAAAAATGGACAA 60
||||||||||||||||||||||||| |||||| || |||||||||| | | |||||||||
Sbjct 32 TTCATGGATTGAGCAAAGAAGAGGACGATAATTTCGAAAATATCGCGATACAATGGACAA 91
Query 61 ATTCTCGTACAACTCGTATCCAGATTCAGCTGAATCTTCGCCAAGATCTCGCGATGTCGA 120
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 92 GTTCTCGTACAATTCGTATCCAGATTCAGCTGAATCGTCGCCAAGATCTCGCGATGTCGA 151
Query 121 GTTTGAAAATCCGCCGCCATGGGAGGACCACCAGCAGCAGAGCTACAAAGTGAAGCTCAT 180
|||||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||
Sbjct 152 ATTTGAAAATCCGTCGCCATGGGAGGACCAGCAGCAGCAGAACTACAAGGTGAAGCTCAT 211
Query 181 GTGCAGTTATGGCGGCAAGATCCAGCCGCGTCCACACGATAATCAGCTTACCTATGTAAA 240
|||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 212 GTGCAGCTATGGCGGCAAGATCCAGCCTCGTCCACACGATAACCAGCTTACTTATGTAAA 271
Query 241 CGGCGATACCAAAATCATGTCGGTCGACCGCGCCATCAGATTTCCTGCTCTT-GTATCGA 299
||||||||||||||||||||||||||| || | ||||||||||| ||| || |||||||
Sbjct 272 CGGCGATACCAAAATCATGTCGGTCGATCGTGGTATCAGATTTCCGGCT-TTAGTATCGA 330
Query 300 AGCTCTCCGCCGTCTGCAGC---GGCGGTGATGGAGGAGAAATCTCGTTCAAGTATCAGC 356
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 331 AGCTCTCCGCCGTCTGCAGCGGTGGTGGTGATGGAGGAGAAATCTCGTTCAAGTATCAGC 390
Query 357 TTCCAGGTGAAGATCTCGATGCGTTGATTTCGGTGACTAACGATGACGATCTGGAGCACA 416
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 391 TTCCAGGTGAAGATCTAGATGCGTTGATTTCGGTGACTAATGATGAGGATCTGGAGCACA 450
Query 417 TGATGCATGAGTACGATCGGTTGCTTCGTATGTCTACTAAACCAGCTAGGATGCGTTTGT 476
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 451 TGATGCATGAGTACGATCGGTTGCTTCGTTTGTCTACTAAACCAGCTAGGATGCGTTTGT 510
Query 477 TTCTCTTCCCGTCTTCACCGATTTCCAGCGGATTTGGCTCTGAAGGTTCGACTAAATCGG 536
|||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||
Sbjct 511 TTCTCTTCCCGTCTTCTCCCATTTCCGGCGGATTTGGCTCCGAAGGTTCGACTAAATCGG 570
Query 537 ATCGGGATACGTTTCATCCGATCCCTAGTCGACCTGAATCGGAGAAATCTGTAACCGCTC 596
||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 571 ATCGGGATACGCTTAATCCAATCCCTAGCCGACCTGAATCGGAGAAATCTGTAACCGCTC 630
Query 597 CTCCGAATAATGCTGATTTTTTGTTTGGATCGGAGAAAGTAGCTCCAATTCCTCCGTCGC 656
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 631 CTCCGAATAATGCTGATTTCTTGTTTGGATCGGAGAAAGTAGCTCCAATTCCGCCGTCGC 690
Query 657 CAGTGAAGGTGCCTCAACCGGTACCGGAACCAGTGGTGCTTGAACCGCCGCCGATGTTCG 716
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 691 CAGTGAAGGTTCCTCAACCGGTACCGGAACCAGTGGTGCTTGAACCGCCGCAGATGTTCG 750
Query 717 TAGATGAACGGATGTTACAACCGGAACACGGCGTAAATCCGGCTGAGATTCAAAGACAAA 776
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 751 TAGATCAACGGATGTTACAACCGGAACACGGCGTAAATCCGGCGGAGATTCAAAGACAAA 810
Query 777 TCCAGGAATTTCAGATGATTCAAATCAGAGATCAAGAGCAACAAATGCTTCATCAGAATC 836
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 811 TCCAGGAATTTCAGATGATTCAAATCAGAGACCAAGAGCAACAAATGCTTCATCAGAATC 870
Query 837 AGCTCCAACAACAACATCAACAACAAGAAGCTATAAATCAGAATCAGCTTCATCAACAAC 896
|||| || |||||||| ||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 871 AGCTACATCAACAACAACAACAACAAGAGGCTATACATCAAAATCAGCTTCATCACCAAC 930
Query 897 AAGAGGCTATACATCAGAATCAGCTTCATCAACAAGAGGCTATACATCAGAATCAGCTGC 956
|||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 931 AAGAGGTTATACATCAGAATCAGCTGCTTCAACAAGAGGCTATACATCAGAATCAGATGC 990
Query 957 TTcaacaacaacaacaacaaGAGGCTATGTACAGAAGAAAAAGCGAAGACGAATCCGGAC 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 991 TTCAACAACAACAACAACAAGAGGCTATGTACAGAAGAAAAACCGAAGACGAAGCCGGAA 1050
Query 1017 GATACTTTCCTCCAACATACACTCAAAATCCGGCGCCGACT-ACGAATCCACAACCTCCG 1075
||||||| ||||| |||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 1051 GATACTTCCCTCCCACATACACTCAAAATCCGGCGCCG-GTGACGAATCAACAACCTCCG 1109
Query 1076 ATTGGCTACTGGCAAGGAAACAACAACAACAATAACATTCCGGGGAATATCTACACAACA 1135
||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||
Sbjct 1110 GTTGGCTACTGGCAAGGAAACACCAACAACAGTAATATTCAGGGGAATATCTACACAACA 1169
Query 1136 ACGTCACAGAATCTACCGGAG------------CAACAACAAGTATACATGATTCCAGCT 1183
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1170 ACGTCACAGAATCTACCGGAGCAACAACAACAACAACAACAAGTATACATGATTCCAGCT 1229
Query 1184 CAATCTCAAGCTCCAGGAACATTATACCAAAGCGTCATGAGACCAACTGTGCAAGGAAAC 1243
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1230 CAATCTCAAGCTCCAGGGACATTATACCAAAGCGTCATGAGACCAACGGTACAAGGAAAC 1289
Query 1244 CAAGGCTATTA-CC--CACCTGTTCAGCGACTTCATCATCCTGATGCATACATGGAGCAG 1300
||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1290 CAAGGTTATTACCCATCACCTGTTCAGCGACTTCATCATCCTGATGCATACATGGAACAG 1349
Query 1301 CAGAACCAGCAAGGTTACAACGTGGTT----CA-A--CAA------CA----G-CCAC-A 1341
|||||||||| |||||||||||||||| || | ||| || | |||| |
Sbjct 1350 CAGAACCAGCCAGGTTACAACGTGGTTCAACCACAGCCAACGTTTTCAGGTGGTCCACAA 1409
Query 1342 G-TAT-TC-AG-G-TGGTCCACAAGTTATGACTAGTGTTGGTCCGCCAATGGGGTTACAG 1396
| ||| | || | |||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 1410 GTTATGACTAGTGTTGGTCCGCAAGTTATGACTAGTGTCGGTCCTCCAATGGGGTTACAG 1469
Query 1397 GAACCGTATTCACAGATGGGAAATCCTATGTACTATACGGTGGCTGGAGAAGGCATGATG 1456
||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 1470 GAACCTTATTCACAGATGGGGAAGCCTGTGTACTATACGGTGGCTGGAGAAGGCATGATG 1529
Query 1457 GTTCAACCGCCACC-gcctcagcctcagcctcagcctcagcctcagcagcagTACCAGGG 1515
|||||||||||||| ||| |||||||||| ||| ||| ||||||||||||||||
Sbjct 1530 GTTCAACCGCCACCAGCC-CAGCCTCAGC---AGC---AGC---AGCAGCAGTACCAGGG 1579
Query 1516 AATGGGTCAACCG---A----C----C-GATCTCAGAACCGGACCGGATGGGAAAGTGGT 1563
||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 1580 AATGGGTCAACCGGTTAGTGGCATGACCGATCTCAGAACCGGACCGGATGGGAAAGTGGC 1639
Query 1564 GGTTAACATGGCTGCACCAAAAGTTTCACAAAGTTCAGATGCG-GTGTGAG-T-GAG--A 1618
||||||||||||||||||| |||||||| | ||| | || | ||||||| | ||| |
Sbjct 1640 GGTTAACATGGCTGCACCACAAGTTTCAGA---TTCGG-TGTGAGTGTGAGATTGAGTTA 1695
Query 1619 ---TTGAGGTTAATGTTATGATTATCCATTTAGAAAAACTTTATGATATATGTATAAAAG 1675
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1696 ACATTGAGGTTAATGTTATGATTATCCATTTCTTTAAACTTTATGATATATGTGTAAAAG 1755
Query 1676 TGGTTTTTTAGATCAAATT-GGAATCTGGATTTCTGATGAATCAATTGAAGCACTTTTGA 1734
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TGTTTTTTTAGATCAAACTAGGAATCTGGATTTCTGATGAATCAATTGAAGCACTTTTGA 1815
Query 1735 TGTTTTTATTTTATT 1749
|||||||||||||||
Sbjct 1816 TGTTTTTATTTTATT 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90059777730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5