BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487780
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09640.1 | Symbols: SNG2, SCPL19 | serine carboxypeptidase-l... 2025 0.0
> AT5G09640.1 | Symbols: SNG2, SCPL19 | serine carboxypeptidase-like
19 | chr5:2988314-2991156 FORWARD LENGTH=1647
Length=1647
Score = 2025 bits (1096), Expect = 0.0
Identities = 1290/1383 (93%), Gaps = 15/1383 (1%)
Strand=Plus/Plus
Query 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTCAAGTGACACTAAG-A-AA-CAGAGAAAA 57
||||||||||||||||||||||||||||||| || |||||||| | || |||||||||
Sbjct 1 AAGGTTCTTCGTTGACATACTATTCTCTGTTGTAGCAACACTAAGAAGAAGCAGAGAAAA 60
Query 58 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTAAGCATCTTC-TCTATTCATCATTTT 116
|||||||||||||||||||||||||||||||||| | | ||||| || |||||||||||
Sbjct 61 TGAGAAACCTTAGCTTCATCGTCTTATTTCTATTGACCCTCTTCTTC-ATTCATCATTTG 119
Query 117 GTTGATGCTTCTTTGCGT-GTGAAGTATCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 175
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 GTTGATGCTTCTTTGC-TAGTGAAGTCTCTTCCTGGTTTTGAAGGTCCTCTTCCTTTTGA 178
Query 176 GCTCGAGACTGGATATGTGAGTATTGGCGAATCTGGAGATGTTGAACTCTTTTACTACTT 235
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 179 GCTCGAGACTGGATATGTGAGTATTGGTGAATCTGGAGATGTTGAGCTCTTTTACTACTT 238
Query 236 TGTGAAATCAGAGAGAAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTGAAATCAGAGAGGAATCCAGAAAATGATCCTCTCATGATTTGGCTCACTGGTGGACC 298
Query 296 TGGCTGTAGCTCCATCTGTGGATTGCTCTTCGCTAACGGTCCTTTAGCTTTTAAAGGGGA 355
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 TGGCTGCAGCTCCATCTGTGGATTGCTCTTCGCAAACGGTCCTTTAGCTTTTAAAGGGGA 358
Query 356 TGAGTATAATGGAACAGTTCCTCCTTTAGAGCTAACATCTTTTTCATGGACAAAGGTGGC 415
|||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||||||||
Sbjct 359 TGAGTATAATGGGACAGTACCTCCTCTAGAGTTGACATCTTTTTCATGGACAAAGGTGGC 418
Query 416 TAACATTTTATATGTGGAATCTCCTGCTGGCTCTGGATATTCTTATGCTAGAACTCGGCG 475
||||||||||||| ||||| ||||||||||||||||||| |||||||| | |||||||||
Sbjct 419 TAACATTTTATATTTGGAAGCTCCTGCTGGCTCTGGATACTCTTATGCGAAAACTCGGCG 478
Query 476 TGCTTTTGAGACGAGCGACATCAAACAAATGCACCAAATTGATCAATTTCTTAGAAGTTG 535
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 479 TGCTTTTGAGTCGAGCGACACCAAACAAATGCACCAAATTGATCAATTTCTTAGGAGTTG 538
Query 536 GTTTGTGGATCACCCGGAGTTTATATCGAATCCTTTTTATGTTGGTGGAGATTCATATTC 595
||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GTTTGTGAAACACCCGGAGTTTATATCGAATCCTTTTTACGTTGGTGGAGATTCATATTC 598
Query 596 CGGGAAAATTGTTCCAGGAGTTGTGCAACAAACTTCACTTGGAAATGAGAAAGGCCTCAC 655
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 599 CGGGAAAATTGTTCCAGGAGCTGTGCAACAAATTTCACTTGGAAATGAGAAGGGCCTCAC 658
Query 656 ACCACTCATAAATCTTCAGGGTTATGTTCTTGGAAACCCTGTAACAGATAAAAACATGGA 715
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 659 ACCACTCATAAATATTCAGGGTTATGTTCTTGGAAACCCTGTGACAGATAAAAACATTGA 718
Query 716 ATCTAACTATAGAATTTCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 775
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AACTAACTATAGAGTTCCATTTGCTCATGGGATGGGACTTATTTCAGATGAGCTCTTTGA 778
Query 776 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATAAAAGATG 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GTCACTTGAAAGAAGTTGTGGAGGCAAATTCTTCAACGTAGACCCAAGTAATGCAAGATG 838
Query 836 CTCAAATAATCTTCAATCTTATGATCATTGTATGTCAGAGATATACGCAGAGCAAATTTT 895
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 839 CTCAAATAATCTTCAAGCTTATGATCATTGTATGTCAGAGATATACTCAGAGCATATTTT 898
Query 896 GTTACGAAACTGCGAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATGG 955
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 GTTACGAAACTGCAAAGTAGATTACGTCTTGGCAGACACACCAAACATCAGAACCGATAG 958
Query 956 AAGAAGAG-AACTGAAGGAGTTTTCAGGAAATGATTCATCATCATTGCCACCTCCTAGCT 1014
|||||||| || ||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 959 AAGAAGAGTAA-TGAAGGAATTTTCAGTAAACGATTCATCATCATTGCCACCTCCTAGCT 1017
Query 1015 GCTTTACTTATAAGTATTTTCTGTCTGCCTTTTGGGCTAACGATGAAAATGTACGCAGAG 1074
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 GCTTTACTTATAGGTATTTTCTGTCTGCCTTTTGGGCAAACGATGAAAATGTACGCAGAG 1077
Query 1075 CTCTAGGCGTGAAGACGGGAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1134
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTCTAGGCGTGAAAAAGGAAGTAGGAAAATGGAACCGATGCAACAGCCAAAACATACCAT 1137
Query 1135 ATACATTTGAGATTAACAATGCATTTCCGTATCACGTAAACAATATTAGTA--GTTTTTC 1192
|||||||||||||| ||||||| |||| |||||||||||||||| | || | || |
Sbjct 1138 ATACATTTGAGATTTTCAATGCAGTTCCTTATCACGTAAACAATAGTCTTAAAGGCTTCC 1197
Query 1193 TTTTTC-CTTCTTTGAAATTGGTGATCATGATTCTATGGTACCCTTCTCTTCAACTCAAG 1251
| || | ||| | | |||||||||||||||||||||||| || |||||||||||||
Sbjct 1198 GCTCTCTCATCT---ACAGTGGTGATCATGATTCTATGGTACCATTTTCTTCAACTCAAG 1254
Query 1252 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGAGCTTGGATGATGAGTA 1311
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 CATGGATCAGAGCTCTCAACTATTCCATTGTTGATGACTGGAGACCTTGGATGATGAGTA 1314
Query 1312 GCAATCAAGTTGCTGGATATACAAGGACTTACGCGAATAAGATGACATTTGCAACCATCA 1371
|||||||||| || || ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1315 GCAATCAAGTCGCAGGCTATACAAGGACTTACGCAAACAAGATGACATTTGCAACCATCA 1374
Query 1372 AGG 1374
|||
Sbjct 1375 AGG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78865056195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5