BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487781
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09650.1 | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr... 1724 0.0
AT5G64501.1 | Symbols: | unknown pseudogene | chr5:25783802-25... 80.5 3e-14
> AT5G09650.1 | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr5:2991149-2993213
REVERSE LENGTH=1181
Length=1181
Score = 1724 bits (933), Expect = 0.0
Identities = 1047/1101 (95%), Gaps = 12/1101 (1%)
Strand=Plus/Plus
Query 1 TTTTTGTGTTCTGTC-TTC-T--T-G-GTGATAAAGAATAAAGAGAGCCAGT-GAGGGTA 53
||||||||||||||| ||| | | | ||||||||||||||||||||||||| |||||||
Sbjct 1 TTTTTGTGTTCTGTCTTTCTTGGTGGTGTGATAAAGAATAAAGAGAGCCAGTCGAGGGTA 60
Query 54 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACGAAAGGCCACCATTTTCAATCTTTCCACAATAATGGCGGCTACTAGAGTGTTAACT 120
Query 114 GCTGCGACGGCCGTAACCCAAACCACCTCGTGTTTCCTCGCCAAGCGAGCTTTTGTTCTA 173
|| ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||
Sbjct 121 GCAGCGACGGCCGTGACCCAAACCACCTCCTGTTTCCTCGCCAAGCAAGCTTTCACTCTT 180
Query 174 CCGGCGAAGAAATCCTGCGGCGGATTTGGCGGTCTCTGCTT---CAGAAGAGATTTGGTG 230
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 181 CCGGCGAAGAAATCCTGCGGCGGATTTGGTGGTCTCTGCTTCAGCAGAAGAGCTTTGGTG 240
Query 231 TTGAAATCTAAGAGACCCTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 290
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAAATCTAAGAGACCTTTCTCCTGCAGTGCCATTTACAATCCTCAGGTTAAGGTTCAA 300
Query 291 GAAGAGGGTCCGCCCGAATCCCTAGATTATCGGGTTTTCTTCCTCGATGGTTCTGGAAAG 350
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAAGAAGGTCCGGCCGAATCCCTAGATTATCGAGTTTTCTTCCTCGATGGTTCTGGAAAG 360
Query 351 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGAGATGGAGTCTTCAACTTTATA 410
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 361 AAGGTTTCTCCATGGCATGATATACCATTGACCTTAGGCGATGGAGTTTTCAACTTTATA 420
Query 411 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGAAATACCTAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACT 480
Query 471 CCTATTAAGCAAGATACTAAGAAGGGCAAGCTCAGATATTATCCGTATAACATAAACTGG 530
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 481 CCTATTAAGCAGGATACTAAGAAGGGGAAGCTCAGATATTATCCGTATAACATTAACTGG 540
Query 531 AACTATGGGTTGCTTCCACAGACATGGGAAGATCCATCTCACGCAAATTCTGAAGTTGAA 590
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 541 AACTATGGGTTGCTTCCTCAAACATGGGAAGATCCATCTCATGCAAATTCTGAAGTTGAA 600
Query 591 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACTCAAAGGAAG 650
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 GGATGTTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAACACAAAGGAAG 660
Query 651 ATAGGAGATGTTCTAAAAATCAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGAGAG 710
||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 661 ATAGGCGATATTCTAAAGATAAAGCCTTTAGCTGCTTTAGCTATGATTGATGAAGGTGAG 720
Query 711 CTAGACTGGAAGATTGTTGCTATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 770
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTAGACTGGAAGATTGTTGCCATTTCTTTGGATGACCCAAAAGCTCATCTTGTGAATGAT 780
Query 771 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTGAAGATGTTGAGAAACATTTCCCGGGTACACTAACAGCCATTAGAGACTGGTTTAGA 840
Query 831 GACTACAAGATCCCAGACGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 890
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACTACAAGATCCCAGATGGAAAGCCTGCTAACAGATTTGGTCTTGGAGACAAACCAGCA 900
Query 891 AACAAAGAATATGCTTTGAAGATCATCCATGAAACAAATGAATCATGGGCTAAACTTGTG 950
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 AACAAAGACTATGCTTTGAAGATCATCCAAGAAACAAATGAATCATGGGCTAAACTTGTG 960
Query 951 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATCTTGCTATGTCCAAT 1010
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |
Sbjct 961 AAGAGATCAGTTGATGCTGGAGACCTTTCACTTTACTGAACATATTTTGCAATGTCGACT 1020
Query 1011 TATGAGTTCGAATAATGAACAGACTGGAGAGTCCTATATCATTCTTGTT-TTTC-TTTCA 1068
|||||| |||||||||||| ||||| ||| |||||||||||||||||| |||| |||||
Sbjct 1021 TATGAGGTCGAATAATGAATAGACTCAAGATTCCTATATCATTCTTGTTGTTTCCTTTCA 1080
Query 1069 TTTGAGATGTAAACATTGGGA 1089
||||||||||||||||||||
Sbjct 1081 ATTGAGATGTAAACATTGGGA 1101
> AT5G64501.1 | Symbols: | unknown pseudogene | chr5:25783802-25783999
REVERSE LENGTH=117
Length=117
Score = 80.5 bits (43), Expect = 3e-14
Identities = 59/66 (89%), Gaps = 4/66 (6%)
Strand=Plus/Plus
Query 574 CAAATTCTGAA-GTTGAAGGATG-TTTTGGGGATAATGATCCAGTTGATGTTGTTGAGAT 631
|||| ||| || ||||| || || |||||| |||||||||||||||||||||||||||||
Sbjct 11 CAAACTCT-AAGGTTGATGG-TGCTTTTGGAGATAATGATCCAGTTGATGTTGTTGAGAT 68
Query 632 TGGTGA 637
||||||
Sbjct 69 TGGTGA 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5