BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487788
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09680.1 | Symbols: RLF | reduced lateral root formation | c... 950 0.0
> AT5G09680.1 | Symbols: RLF | reduced lateral root formation |
chr5:2999202-3000591 REVERSE LENGTH=922
Length=922
Score = 950 bits (514), Expect = 0.0
Identities = 626/677 (92%), Gaps = 20/677 (3%)
Strand=Plus/Plus
Query 394 AAGCTCAAGATGGATTCTACTAG-AGATGATGATGATTTCACATTCTCAAAAGTTGCGCC 452
|||||||||||||| |||||| ||| ||||||||||||||||||||||| ||| | ||
Sbjct 118 AAGCTCAAGATGGA---TACTAGTAGA-GATGATGATTTCACATTCTCAAAGGTTTCACC 173
Query 453 ACCAGATAGTGAAGCTGTTCTTGAGGCAAAAGCTCTTGCGTCAGATGTGGGTAGTATTAC 512
||||||||||||| | || |||| |||||| |||||||| |||||||||||
Sbjct 174 ACCAGATAGTGAA---G---TT------AAAGATCTTGCATCAGATGTAGGTAGTATTAC 221
Query 513 CCTTAAAGATGGATTAGATCAAC---AAAGCAATGGTCTTATTTGGAAAGACAAGTCTCT 569
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 CCTTAAAGATGGGTTAGATCAACAAAAAAGCAATGGTCTTATTTGGAAAGACAAGTCTCT 281
Query 570 TCCTCCAAAGGAAGAAACAATAGGTTCTTTGTCTTTCAATGTGATTGATTCTTCATCTTT 629
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 282 TCCTCCAAAGGAAGAAACAATAGGTTCTTTGTCTTTCACGGTGACTGATTCTTCGTCTTC 341
Query 630 GAAAAAGCAGTCCAATGAATCATCTGAGACTTTCAAAACTCCTGCTAGAAAGCCTATCAC 689
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 342 GAAAAAGCAATCCAATGAATCCTCTGAGACTTTCAAAACTCCAGCTAGAAAGCCTATCAC 401
Query 690 TCGTACCAAAGTTCCTTTTGAAAAAGGTTATAGCCAAATGGATTGGTTGAAACTTACACG 749
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 402 TCGTACCAAGGTTCCATTTGAAAAGGGTTATAGCCAAATGGATTGGTTGAAACTTACACG 461
Query 750 AACACATCCCGATCTTGCAGGCTTGAAGGGAGAGTCAAATAAGAGGCTTATTCCAATGGA 809
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 462 AACACATCCCGATCTTGCAGGCCTGAAGGGAGAGTCAAACAAGAGGCTTATTCCAATGGA 521
Query 810 TGAAGTGAAGAAGCACCGATCAGGAGATTCAATGTGGACTGTTTTGAAAGGTCGTGTGTA 869
|||||| ||||| |||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 522 TGAAGTAAAGAAACACCGAACAGGAGATTCGATGTGGACTGTTTTGAAAGGTCGTGTATA 581
Query 870 CAACATATCGCCTTATATGAATTTTCATCCTGGAGGTGTCGATATGCTGATGAAAGCTGT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 582 CAACATATCGCCTTATATGAATTTTCATCCTGGAGGTGTCGATATGCTGATGAAAGCGGT 641
Query 930 GGGAAGAGACGGTACGCTCTTATTCAACAAATACCATGCTTGGGTCAATGTTGATATGTT 989
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 642 TGGAAGAGACGGTACGCTCTTATTCAACAAATACCATGCCTGGGTCAATGTTGATATCTT 701
Query 990 ACTTGAGAAATGCCTTGTTGGAGTTTTGGATGTTACCAAAGTGAAGAAGCAAGAAGCCTA 1049
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 702 ACTTGAGAAATGCCTTGTTGGAGTTTTGGATGATACCAAAGTGAAGAAGCAAGAACCCTA 761
Query 1050 ATTGCTATTGCTAAAAG 1066
|||||||||||||||||
Sbjct 762 ATTGCTATTGCTAAAAG 778
Score = 156 bits (84), Expect = 5e-37
Identities = 93/97 (96%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 1 CAAATAGATCTCTCCCTCTTTCGTCGCTCTTTGTTTTTCTTCACTGGTCTTTGTTTCTCC 60
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 19 CAATTAGATCTCTCCCTCTTTCGTCGCTCTTTG-TTTTCTCCACTGGTCTTTGTTTCTCC 77
Query 61 TTCGATTCTCTGTCTGGAGCAGTCTCAGATCCACCAG 97
|| ||||||||||||||||||||||||||||||||||
Sbjct 78 TTTGATTCTCTGTCTGGAGCAGTCTCAGATCCACCAG 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5