BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487795
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH) DNA... 981 0.0
> AT5G09750.1 | Symbols: HEC3 | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:3026401-3027075 REVERSE
LENGTH=675
Length=675
Score = 981 bits (531), Expect = 0.0
Identities = 601/634 (95%), Gaps = 8/634 (1%)
Strand=Plus/Plus
Query 1 ATGAATAATAATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATC 60
Query 61 AACAGCAG---CAACAACAACAAGAATGATG---ATCATCATCAACATAATAATGATCCA 114
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AACAGCAGCAACAACAACAACAAGAATGATGATCATCATCATCAACATAATAATGATCCA 120
Query 115 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATAtcttcaatcctttctcttcttct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCT 180
Query 175 catttccctcctctctcttcttccctcagtaccaccactcttttctccGGAGATCAAGAA 234
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 CATTTCCCTCCTCTCTCTTCTTCCCTCACAACCACCACTCTTCTCTCCGGAGATCAAGAA 240
Query 235 GAGGACGAAGACGAAGAAGAACCTCTTGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 294
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC 300
Query 295 AAGATCGCAGCCATGCAGTCGGTTGACATCGACCCGGCAACCGTCAAGAAACCCAAACGC 354
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGC 360
Query 355 CGTAACGTAAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGGCTAGACATCGCCGTGAGAGA 420
Query 415 ATCAGTGAGAGAATCAGAATCCTCCAGAGACTCGTGCCAGGTGGCACTAAAATGGACACA 474
||||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 421 ATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACG 480
Query 475 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGCCTA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GCTTCAATGCTCGATGAAGCTATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTA 540
Query 535 CTCAATAATAAT-CCGGGAAATCCTTCTCCTCCGCCGCAAGATCAAGCTTCTCAGGCGTT 593
|||||||||||| |||| | || || |||| ||||||||||||||||||||||||||| |
Sbjct 541 CTCAATAATAATACCGG-ATATACTCCTCCGCCGCCGCAAGATCAAGCTTCTCAGGCGGT 599
Query 594 AACGACGTCATGGATTTCGCCACCACCACCACCA 627
|||||||||||| |||| || |||||||| |||
Sbjct 600 GACGACGTCATGGGTTTCACCGCCACCACCGCCA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5