BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487801
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09800.1 | Symbols: | ARM repeat superfamily protein | chr5... 1812 0.0
AT5G64660.1 | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY ... 564 9e-160
> AT5G09800.1 | Symbols: | ARM repeat superfamily protein | chr5:3043012-3044413
REVERSE LENGTH=1402
Length=1402
Score = 1812 bits (981), Expect = 0.0
Identities = 1187/1284 (92%), Gaps = 24/1284 (2%)
Strand=Plus/Plus
Query 1 AAACGTTTTCGCCGAAGAAGAAAGAGCCAAAACATGAGGAGCGACGATCTTTACATCACC 60
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 29 AAACGTTTTCGCCGAAGAAGAAAGAGCAAAAACATGAGGAGCGATGATCTTTACATCACC 88
Query 61 ACCGTCCCTTGTTTCTTCAAGTGTCCGATTTCACTTGATGTGATGAAATCTCCGGTGAGT 120
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 89 ACCGTCCCTTGTTTCTTCAAATGTCCAATTTCACTTGATGTGATGAAATCTCCGGTGAGT 148
Query 121 CTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGGTGGTAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 149 CTCTCCACCGGCGTTACATACGACCGAGTTAGCATCCAACGTTGGCTCGATGATGGTAAC 208
Query 181 AATACTTGTCCCGCCACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACA 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 AATACTTGTCCCGCGACGATGCAGATTCTTCAGAACAAAGAATTCGTACCTAACCTAACT 268
Query 241 CTCCACCGTCTCATTGATCTCTGGTCCGACTCCATCAACCGTCGTGCCGGTTCTGAGTCT 300
|| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 269 CTTCACCGTCTCATTGATCACTGGTCCGACTCCATCAACCGTCGAGCCGATTCTGAGTCT 328
Query 301 CCGGAATCAAATACTCCCTCGCGAGACGAAATCAACGCTGCGATTGAGAAAATCCGGATT 360
|||||||| ||||||| ||||||||||||| |||||||||||||||| | |||||||
Sbjct 329 CCGGAATCCGATACTCCGACGCGAGACGAAATTAACGCTGCGATTGAGAGATTCCGGATC 388
Query 361 GAGAATGATAATTGCGACGTACTTTCGAAGATTCTCCGGTTCGCGAAAGAATCTGATGAG 420
||||||| | | | | | | ||||||||||||||||||||||| |||||||||||||
Sbjct 389 GAGAATG---A-T--G-C-T-CGTTCGAAGATTCTCCGGTTCGCGAGAGAATCTGATGAG 439
Query 421 AACAGAGAGTTTCTCGCCGGAAAAGATGATTTCGTAG-GTATGCTTGTGGATCTCATTAT 479
|||||||||||||||||||| |||||||||||||||| | |||||||||||||||| | |
Sbjct 440 AACAGAGAGTTTCTCGCCGGGAAAGATGATTTCGTAGCG-ATGCTTGTGGATCTCA-T-T 496
Query 480 CCAATTCGATTCCAGACACTTCTCGGGTTCTCAATTGATACTCGTTGGAGAAGCGGTGAA 539
| |||||||||| ||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 497 ---A-GCGATTCCAGAAACTTCTCTGATTCTCAATTGCTACTCGTTGGAGAAGCGGTGAA 552
Query 540 GATTCTGAGCATGATTTGCCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTT 599
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GATTCTGAGCATGATTCGTCGGAAAATCTTCGATCGGAGACGGTTATCGAATCTGATCTT 612
Query 600 ATCCAACGGTGGCGATTGCTTGACGTCCTTCTTCCTATTGATTAAAAGCGGGAATCCTAA 659
| | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 613 AACGAACGGTGGTGATTGCTTGACTTCCTTCTTCCTATTGATTAAACGCGGGAATCCAAA 672
Query 660 ATTGAAGATCGATTGTTCCGCCGTGCTTGAGTTTATCGCCGTCGATGCCGAGTCAAAGCT 719
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 673 ATTGAAGATCGATTGCTCCGCCGTGCTTGAGTTTATCGCCGTCGACGCAGAGTCAAAGCT 732
Query 720 TATAATCGCCGAGAGAGACGGATTAGTCATCGAGATTATGGAATCGATAAGCTCAGATTC 779
|||||||||| || |||| ||||| |||| ||||||||| ||| |||||||||||||||
Sbjct 733 TATAATCGCCAAGGGAGAAGGATTGGTCACCGAGATTATTAAATTGATAAGCTCAGATTC 792
Query 780 AGATTCAAGCTTAATCGAAGCGAGTTTATCCTTGTTAATCGCGATTGCGTCTTCAAAACG 839
|| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 793 CGACTCAAGCTTAATCGAAGCGAATTTATCTTTATTAATCGCGATTGCGTCTTCAAAACG 852
Query 840 CGTGAAACTCTCATTAATCAGAGAGAAGCTAGTCACGAAGCTCACGAGTTTGTTAACAGA 899
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 853 CGTGAAACTCGCATTAATCAGAGAAAAGCTAGTCACGAAACTCACGAGTTTGTTAACAGA 912
Query 900 TCCAACAACGAGCGTTTCAGTGACAGAGAAATGCCTAAAACTTCTCGAAGCTTTTTCGTC 959
|||||| ||||||||||||||||| || |||||| |||| |||||||||||| |||||||
Sbjct 913 TCCAACTACGAGCGTTTCAGTGACGGAAAAATGCTTAAAGCTTCTCGAAGCTATTTCGTC 972
Query 960 TTGCAAAGAAGGTCGATCGGAGATATGCGACGGTGCGTGCGTGGAGACGGTGGTTAAGAA 1019
||| |||||||||||||||||||| || || |||| |||||||||||||||||| || ||
Sbjct 973 TTGTAAAGAAGGTCGATCGGAGATTTGTGATGGTGTGTGCGTGGAGACGGTGGTGAATAA 1032
Query 1020 GCTGATGAAAGTATCGACGGCGGCGACTGAACACGCCGTCACGGTTTTGTGGAGCGTCTG 1079
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1033 GCTGATGAAAGTGTCGACGGCGGCGACTGAACACGCCGTTACGGTTTTGTGGAGCGTCTG 1092
Query 1080 TTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATTAAG-ACTAACGGCGTTACGA 1138
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1093 TTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTTATT-AGAATTAACGGCGTTACGA 1151
Query 1139 AGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGATACTGTTACTTTTACAGAGTAATTGCTCGCTTACCGTTAGGCATATGCTAACGGATC 1211
Query 1199 TTCTTAAGGTCTTGAAGGTGAACTCAAGATCTTGCCTTT----ATACCGAAACCAAAACG 1254
|||||||||| || ||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1212 TTCTTAAGGTGTTCAAGGTGAACTCAAGATCTTGCCTTTCGGTATAC-GAAACCAAAACG 1270
Query 1255 ACACACATTATGCCGTTTTGATTa 1278
||||| ||||||||||||||||||
Sbjct 1271 ACACATATTATGCCGTTTTGATTA 1294
> AT5G64660.1 | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY
protein 2 | chr5:25841913-25843452 REVERSE LENGTH=1540
Length=1540
Score = 564 bits (305), Expect = 9e-160
Identities = 984/1302 (76%), Gaps = 86/1302 (7%)
Strand=Plus/Plus
Query 26 GCCAAAAC-ATGAGGAGCGACGATCTTTACATCACCACCGTCCCTTGTTTCTT-CAAGTG 83
|||||| | ||||||| || ||||| | ||| ||| || ||| ||||| | | ||
Sbjct 63 GCCAAAGCAATGAGGAAAGATGATCTCTGCAT---CACTGTTCCTACCTTCTTCCGA-TG 118
Query 84 TCCGATTTCACTTGATGTGATGAAATCTCCGGTGAGTCTCTCCACCGGCGTTACATACGA 143
||| || || || || || |||||||||||||||||||| | |||||||||||| |||||
Sbjct 119 TCCTATATCTCTCGACGTTATGAAATCTCCGGTGAGTCTTTGCACCGGCGTTACCTACGA 178
Query 144 CCGAGTTAGCATCCAACGTTGGCTCGATGGTGGTAACAATACTTGTCCCGCCACGATGCA 203
|||| ||| |||||||| ||||| || || || || || |||||||| || ||||||||
Sbjct 179 TCGAGCTAGTATCCAACGGTGGCTTGACGGCGGGAATAACACTTGTCCGGCGACGATGCA 238
Query 204 GATTCTTCAGAACAAAGAATTCGTACCTAACCTAACACTCCACCGTCTCATTGATCTCTG 263
|||||||||||| ||||| ||| |||| || | || || || ||||| || || | ||
Sbjct 239 GATTCTTCAGAATAAAGATTTCATACCGAATCGGACTCTTCAACGTCTTATCGAGATTTG 298
Query 264 GTCCGACTC-CATCAACCGTCGTGCCGGT-TCTGAGTCTCCGGAATCAAATACTCCCTCG 321
||| || || || ||||| | || | ||| || |||||| | | |||| ||
Sbjct 299 GTCTGATTCTGTTC-GTCGTCGAACTTGTGT-TGAATCGGCGGAATTAGCTGCTCCGACG 356
Query 322 CGAGACGAAATCAACGCTGCGAT---T-GA--GAAAATCCG-GATTG-AG-AA-TGATAA 371
||||||| ||| || |||||| | || ||| || || || | || || ||| |
Sbjct 357 AGAGACGAGATCGCCGATGCGATCGATAGAGTGAAGAT-CGAGAAAGAAGAAAGAGATGA 415
Query 372 TTGCGACGTACTT-TCGAAGATTCTCCGGTTCGCGAAAGAATCTGATGAGAACAGA-GAG 429
| |||| || || ||||||||| | || |||| || |||||||||||| |||||| ||
Sbjct 416 TCGCGAGGT-TTTGTCGAAGATTGTTCGATTCGGGAGAGAATCTGATGATAACAGAGGA- 473
Query 430 TTTCTCGCCGGAAAAGATGATTTCGTAGGTA-TGCTTGTGGATCTCATT-ATCCAATTCG 487
|||||||||||||||||||||||||| | | | || |||||||| ||| || || | |
Sbjct 474 TTTCTCGCCGGAAAAGATGATTTCGT-GAAACTTCTCGTGGATCTGATTAAT-CAGGTGG 531
Query 488 A-TTCCAGA-CACTTCTCGGGTTCTCAAT-TGATACTCGTTGGAGAAGCGGTGAAGATTC 544
| ||| | | ||| ||| | | ||| | | | ||| |||||||||||||||||
Sbjct 532 ATTTCGAAACCAC--CTCCGCCGCGAAATCT-CTGGTTGTTCAAGAAGCGGTGAAGATTC 588
Query 545 TGAGCATGATTTGCCGGAAAATCTTC-GATCGGAGACGGTTATCGAATCTGATCTTATCC 603
|||| | |||| | | ||| || || |||||||||||||| ||||||||||| ||| ||
Sbjct 589 TGAGTACGATTCGAAGCAAAGTC-TCAGATCGGAGACGGTTTTCGAATCTGATTTTAACC 647
Query 604 AACGGTGGCGATTGCTTGA-C-GTCCTTCTTCCTA-TTGATTAAAAGCGGGAATCCT-AA 659
|||||| | ||| | || | | || || | ||| ||| |||||| ||||||| | |
Sbjct 648 AACGGTCGAGATCGGTT-ATCGGT-GATCGT-CTACTTGTTTAAAACCGGGAAT-GTCGA 703
Query 660 ATTGAAGATCGATTGTTCCGCCGTGCTTGAGTTTATCGCCGTCGATGCCGAGTCAAAGCT 719
|||||| || ||||| ||| | |||||||| ||||||||||| || || ||||||||
Sbjct 704 ATTGAAAATTGATTGCGCCGGTTTACTTGAGTTCATCGCCGTCGACGCTGAATCAAAGCT 763
Query 720 -TATAATCGCCGAGAGAGACGGATTAGTCATC-GAGATTATGGAATCGATAAGCT-CAGA 776
| |||||||||||||||| |||||| ||| | ||| | ||| ||||||| || | |||
Sbjct 764 GT-TAATCGCCGAGAGAGATGGATTAATCA-CGGAGCTAATGAAATCGATTAG-TAAAGA 820
Query 777 TTCAGATTCAAGCTTAATCGAAGCGAGTTTATCCTTG-TTAATCGCGATT-GCGTCTTCA 834
||| |||| ||| ||||||||| ||||||||| | || || ||||||||| || || |
Sbjct 821 TTCTGATTTAAGTTTAATCGAATCGAGTTTAT-CGTGCTTGATCGCGATTAGC-TCACCG 878
Query 835 AAACGCGTGAAACTCTCAT-TAATCAGAGAGAAGCT-AGTCACGA-A-GCTCACGAGTTT 890
||||| ||||||||| || | || ||||||| || | || || | | | |||| |
Sbjct 879 AAACGTGTGAAACTC-AATCTCCTCCGAGAGAAACTCA-TC-GGAGATG-TTACGAAACT 934
Query 891 GTTAACAGATCCAA---CAAC---GAGCGTTTCAGTGACAGAGAAATGCCTAAAACTTCT 944
|||| ||||| ||| | | ||||||||| ||||| ||||||||| | || |||||
Sbjct 935 GTTATCAGATTCAACGTCGTCGTTGAGCGTTTCGGTGACGGAGAAATGCTTGAAGCTTCT 994
Query 945 CGAAGCTTTT-TCGTCTTGCAAA-GAAGGTCGATCGGAGATATGCGAC-G-G-T-GC--G 996
| || |||| | || | |||| ||||| ||||||| || |||| | | | | || |
Sbjct 995 -GGAGATTTTAGCATC-TACAAAGGAAGGGAGATCGGAAATTTGCGGCGGAGATGGCGAG 1052
Query 997 TGCGTGGAGACGGTGGTTAAGAAGCTGATGAAAGTATCGACGGCGGCGACTGAACACGCC 1056
|| || |||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 1053 TGTTTGAAGACGGTGGTTAAGAAGCTGATGAAAGTGTCAACGGCGGCGACGGAGCACGCC 1112
Query 1057 GTCACGGTTTTGTGGAGCGTCTGTTATCTTTTCAAGGAAAAGAAGGCGCAAGATGCCGTT 1116
|| ||||| ||||||| || | |||||| ||||| ||| | || || || || |||
Sbjct 1113 GTGACGGTGCTGTGGAGTGTTTCTTATCTATTCAAAGAAGATAAAGCTTTGGAAGCTGTT 1172
Query 1117 ATTAAGACT-AACGGCGTTACGAAGATACTGTTACTTTTACAGAGTAATTGCTCGCTTAC 1175
| ||| | ||||| |||||||| || |||||||| |||||||| |||||||| | |
Sbjct 1173 AC-AAGTGTTAACGGAGTTACGAAAATTCTGTTACTGTTACAGAGCAATTGCTCTCCCGC 1231
Query 1176 CGTTAGGCATATGCTAACGGATCTTCTTAAGGTCTTGAAGGTGAACTCAAGATCTTGCCT 1235
|||||| | |||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1232 CGTTAGACGTATGTTAACGGATCTTCTTAAGGTCTTCAAGGTGAATTCAAGATCTTGCCT 1291
Query 1236 TTA---T-ACCGAAACCAAAACGACACACATTATGCCGTTTT 1273
|| | || || |||||||||||||| || ||||||||||
Sbjct 1292 TTCGGCTTAC-GACACCAAAACGACACATATCATGCCGTTTT 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5