BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487804
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09820.2 | Symbols: | Plastid-lipid associated protein PAP ... 1354 0.0
AT4G13160.1 | Symbols: | Protein of unknown function, DUF593 |... 52.8 7e-06
> AT5G09820.2 | Symbols: | Plastid-lipid associated protein PAP
/ fibrillin family protein | chr5:3055779-3057447 REVERSE
LENGTH=1200
Length=1200
Score = 1354 bits (733), Expect = 0.0
Identities = 934/1024 (91%), Gaps = 41/1024 (4%)
Strand=Plus/Plus
Query 1 tcttcttcttcttcttcttAATAAGCTCCATTGGATTTAGAGA--------T-T---CTG 48
|||||||||||| ||||||| ||||||||||||| |||||||| | | |||
Sbjct 5 TCTTCTTCTTCTACTTCTTATTAAGCTCCATTGGGTTTAGAGATTCTGGTGTATAAACTG 64
Query 49 --AATGACAAGTAAGCTTATCCAGCCACCATCAATGGCAGCTTCACGAGGAGCAATCTCA 106
|||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTAATGACGAGTAACCTTTTCCAGCCACCATCAATGGCAGCTTCACGAGGAGCAATCTCG 124
Query 107 AGAAGAGCAGGAAACGTGAAAGTGTTAGTCTCGTTCACCAATTCTAATAGCAAAACGCTG 166
|||||| |||||||||||||||| |||||||| ||||||| ||||||| |||||||||||
Sbjct 125 AGAAGAACAGGAAACGTGAAAGTATTAGTCTCTTTCACCAGTTCTAATGGCAAAACGCTG 184
Query 167 AGTTTTAGTGATAACTCATTTAGGCTCAGACCCATGTTCATTGGGAAAGTCACAGAACAG 226
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 185 AGTTTTAGTGACAACTCATTTAGGCTCAGACCCATGTTCATCGGGAAAGTCACAGAACAG 244
Query 227 AGCTC-TGCTTCCTCCCCAAATG------AAC------AAGAACAAGAACAAGAACAAG- 272
|| || || |||||||||||||| ||| |||||||||||||||||||||
Sbjct 245 AGTTCTTG-TTCCTCCCCAAATGAACAACAACAAGATGAAGAACAAGAACAAGAACAAGA 303
Query 273 A-AG-TTACAGTTACCCAGATTAAAGAAGAGCTCTACGAAGCTCTCAAAGGGATCAATAG 330
| || |||||||| | || || ||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGAGATTACAGTTTCTCATATAAAAGAAGAGCTCTACGAAGCTCTCAAAGGGATCAATAG 363
Query 331 AGGGATATTCGGAGTTAAGTCAGATaaaaaaaCAGAGATCGAGGGATTGGTTAAGCTTTT 390
||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||
Sbjct 364 AGGGATATTCGGAGTTAAGTCGGATAAAAAGACAGAGATCGAGGGACTGGTGAAGCTTTT 423
Query 391 AGAATGTCGGAATCCGACACCGGAGCCGACCGGAGAGTTAGACAAGATCGGAGGTTGTTG 450
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 424 GGAATGTCGGAATCCGACACCGGAGCCGACTGGAGAGTTAGACAAGATCGGAGGTTGCTG 483
Query 451 GAAACTCATTTACAGTACAATCACTGTATTGGGTTCTAAAAGAACCAAATTGGGTCTTCG 510
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 484 GAAACTCATTTACAGTACAATCACTGTATTGGGTTCTAAACGAACTAAATTGGGTCTTCG 543
Query 511 AGATTTCGTCTCTCTCGGTGATCTTCTTCAACATATCGACATTGCTCAGGGCAAAACGGT 570
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 544 AGATTTCGTCTCTCTTGGTGATCTTCTTCAACAGATTGACATTGCTCAGGGCAAAACGGT 603
Query 571 CCATGTGTTGAAATTCGATGTCCGGGGATTGAATCTACTCGACGGAGAGTTTAGAATCGT 630
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 604 CCATGTGTTGAAATTCGATGTCCGGGGATTGAATCTACTCGACGGCGAGTTTAGAATCGT 663
Query 631 CGCTTCCTTCAAGATCTC-TAGCAAATCGAGTGTTGAGATTACTTATGAAAGCTCAACGA 689
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 664 CGCTTCCTTCAAGATCTCGT-CCAAATCGAGTGTAGAGATTACTTATGAAAGCTCAACGA 722
Query 690 TCAGGCCAGACCAGTTGATGAACATATTTAGGAAGAACATGGATCTTCTTTTGGGAATCT 749
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCAAACCAGACCAGTTGATGAACATATTTAGGAAGAACATGGATCTTCTTTTGGGAATCT 782
Query 750 TCAACCCCGAGGGACTATTCGAGATTTCATATTTAGACGAAGATTTACAAGTAGGCAGAG 809
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 783 TCAACCCCGAGGGACTATTCGAGATTTCATACTTAGACGAAGATTTACAAGTAGGGAGAG 842
Query 810 ATGGGAAAGGGAATGTTTTTGTTTTGGAAAGAACAGAGAAACCTTAAAATCTTT-ATACG 868
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 843 ATGGGAAAGGGAATGTTTTTGTTTTGGAAAGAATAGAGAAACCTTAAA-TCTTTTATACC 901
Query 869 AAAAAATGTTTACTTCATTTTC--CAAACTCATTTCCATAAGAAGAAATTGCTTGTTTCT 926
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 902 AAAA--TGTTTACTGCATTTTTTTCAAACTCATTTCCATAAGAAGAAATTGCTTGTTTCT 959
Query 927 CAAGAAAATTTTAAACTTTTTCTTTGGTTTTGGATAT-ACCAATCAGTATTTCAACtttt 985
|||||||||||| || |||||||||||||| || ||| |||| |||||||||| ||||
Sbjct 960 CAAGAAAATTTTCAATTTTTTCTTTGGTTTGGGTTATGACCA-TCAGTATTTCTTCTTTC 1018
Query 986 tttt 989
||||
Sbjct 1019 TTTT 1022
> AT4G13160.1 | Symbols: | Protein of unknown function, DUF593
| chr4:7653647-7654925 FORWARD LENGTH=1103
Length=1103
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 248 GAACAAGAACAAGAACAAGAACAAGAAG 275
||||||||||||||||||||||||||||
Sbjct 427 GAACAAGAACAAGAACAAGAACAAGAAG 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5