BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487805

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09830.1 | Symbols:  | BolA-like family protein | chr5:30576...   579    8e-165


> AT5G09830.1 | Symbols:  | BolA-like family protein | chr5:3057646-3058821 
REVERSE LENGTH=504
Length=504

 Score =  579 bits (313),  Expect = 8e-165
 Identities = 350/367 (95%), Gaps = 6/367 (2%)
 Strand=Plus/Plus

Query  1    ATTAGGGATTTCAATTTTTGTTTGACAGAGAAAGAGAGAGATGGTGACGAAGGAGCAAGT  60
            ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  13   ATTAGGGATTTCAATTTTTGTTTGAGAGAGAGAGAGAGAGATGGTGACGAAGGAGCAAGT  72

Query  61   CGAAGCTTCACTGACTTCGAAACTTAAGCCAATTCATCTTGAAGTCATTGACATATCTGG  120
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  73   CGAAGCTTCATTGACTTCGAAACTTAAGCCAATTCATCTCGAAGTCATTGACATATCTGG  132

Query  121  AGGATGTGGTGCGAGTTTTG-AGATCGAGGTTGTCTCTGAACAATTCGAAGGGAAGAGAT  179
            ||| |||||| ||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct  133  AGGTTGTGGTTCGAGTTTTGAAG-TGGAGGTTGTCTCTGAACAATTCGAAGGGAAGAGAT  191

Query  180  TGCTGGAGAGGCACCGTATGGTGAATGCTGCGCTTGAAGAAGAAATGAAAGAGATTCATG  239
            ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  192  TGCTGGAGAGGCATCGTATGGTGAATGCTGCGCTAGAAGAAGAAATGAAAGAGATTCATG  251

Query  240  CTCTCTCTATTAAGAAAGCTCAGACTCCACAACAATGGAAGCCACCATCACAAGACTCTG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  CTCTCTCTATTAAGAAAGCTCAGACTCCACAACAATGGAAGCCACCATCACAAGACTCTG  311

Query  300  CAACCTTAACCAAAGATGCCTGAATTTCt-ttttttAAG-GTCGTTTGTGACAAAGAACA  357
            ||||||||||||||||||||||||||||| ||||||||  | | || |||||||||||||
Sbjct  312  CAACCTTAACCAAAGATGCCTGAATTTCTGTTTTTTAAAAGCC-TT-GTGACAAAGAACA  369

Query  358  GAGCATT  364
            |||||||
Sbjct  370  GAGCATT  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5