BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487812
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09890.2 | Symbols: | Protein kinase family protein | chr5:... 3275 0.0
AT4G14350.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 126 7e-28
> AT5G09890.2 | Symbols: | Protein kinase family protein | chr5:3085545-3089010
REVERSE LENGTH=1984
Length=1984
Score = 3275 bits (1773), Expect = 0.0
Identities = 1928/1999 (96%), Gaps = 26/1999 (1%)
Strand=Plus/Plus
Query 1 TCTCTGGTAAATAGTCCACGTTCTGGCGTCTTTGGGATTTCACCAACACCGTGACAGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGGTAAATAGTCCACGTTCTGGCGTCTTTGGGATTTCACCAACACCGTGACAGCTC 60
Query 61 CTTAGATCTCTCCTCGATTACTTCCTTTTTAATTTCCATGGctctct-aaaatctctctc 119
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTAGATCTCTCCTCGATTACTTCCTTTTTAATTTCCATGGCTCTCTAAAAATCTCTCTC 120
Query 120 tctctctctctctctctctctctct-TACTTGTTTTACGATCTCTCTGCCTGAAGACTAT 178
||| | ||||||||||| | || | || ||| |||||| ||||||| |||||| |||
Sbjct 121 TCT-T-TCTCTCTCTCT-T-ACT-TGTA-TTG--TTACGA--TCTCTGCTTGAAGATTAT 170
Query 179 GGACGGCGCCGATGGAACCGTTCGCGTCAAGCCTGGTCGCGGATTTGAAACGGAGACGGA 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 171 GGACGGCGCCGATGGAACCGTTCGCGTCAAGCCTGGTCGCGGATTCGAAACGGAGACGGA 230
Query 239 TGTTGCGGTTTCGTCGCCAGTGACACGTCAGAAAGCTGCTGCAGCTAAGCAATTCATCGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGTTGCGGTTTCGTCGCCAGTGACACGTCAGAAAGCTGCTGCAGCTAAGCAATTCATCGA 290
Query 299 GAATCATTATAAGAACTACTTGCAAGGCTTGCACGAACGAATGGAGAGACGCAGAGAGTT 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 291 GAATCATTATAAGAATTACTTGCAAGGCTTGCACGAACGAATGGAGAGACGCAGGGAGTT 350
Query 359 TCAGAGGAAAGTGCAAGAAGCTCAGTTACCGGTTGAGGAACAAGATGAGATGATGAGGAC 418
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 351 TCAGAGGAAAGTGCAAGAAGCTCAGTTACCTGTTGAGGAACAAGACGAGATGATGAGGAA 410
Query 419 TCTGGCACGTCGTGAAACCGAGTATATGAGACTTCAGAGACGTAAAATTGGGATTGATGA 478
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTGGCTCGTCGTGAAACTGAGTATATGAGACTTCAGAGACGTAAAATTGGGATTGATGA 470
Query 479 CTTTGAGCTTTTGACCGTTATTGGCAAAGGTGCCTTTGGTGAGGTTAGATTATGCCGTTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 471 TTTTGAGCTTTTGACCGTTATTGGCAAAGGTGCCTTTGGTGAGGTTAGATTATGTCGTTT 530
Query 539 GAGATCTACATCTGAGGTTTATGCCATGAAGAAATTGaaaaaaaCTGAGATGCTTAGCCG 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAGATCTACATCTGAAGTTTATGCCATGAAGAAATTGAAAAAAACTGAGATGCTTAGCCG 590
Query 599 TGGACAGGTTGAGCATGTCAGGTCCGAGAGGAACTTACTTGCAGAAGTTGACAGCCGTTA 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGGACAGGTAGAGCATGTCAGGTCCGAGAGGAACTTACTTGCAGAAGTTGACAGCCGTTA 650
Query 659 CATTGTAAAGCTTTTTTACTCTTTTCAAGATTCTGAATGTTTGTATCTTATCATGGAGTA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CATTGTAAAGCTTTTTTACTCTTTTCAAGATTCTGAATGTTTGTATCTTATCATGGAGTA 710
Query 719 TTTACCTGGGGGTGACATCATGACTTTACTCATGAGAGAAGACATTCTTTCTGAAGATGT 778
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 711 TTTACCTGGGGGTGACATCATGACACTACTCATGAGAGAAGACATTCTTTCTGAAGATGT 770
Query 779 TGCCCGTTTTTATATTGCGGAGAGCATTCTTGCTATCCATTCAATTCATCAACATAACTA 838
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 771 TGCCCGTTTTTATATTGCTGAGAGCATTCTTGCCATCCATTCAATTCATCAACACAACTA 830
Query 839 TGTTCACAGGGACATCAAACCTGACAATTTGATACTAGACAAAAGTGGTCATTTGAAGCT 898
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 831 TGTTCACAGGGACATCAAACCTGATAATTTGATACTAGACAAAAGTGGGCATTTGAAGCT 890
Query 899 TTCGGATTTTGGCTTATGTAAGCCACTAGATGATAAGTATTCTTCACTGCTATTAGAAGA 958
||| |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 891 TTCAGATTTTGGTTTATGTAAGCCACTTGATGACAAGTATTCTTCATTGCTATTAGAAGA 950
Query 959 CGATGAAATGTTGTCTCAGGATTCAGAGAACCAGTCAGGAAAATCAGACGCTGACAAAGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CGATGAAATGTTGTCTCAGGATTCAGAGAACCAGTCAGGAAAATCAGACGCTGACAAAGC 1010
Query 1019 ACCCTGGCAAATGCCTAAAGAGCAGTTACTGCAATGGAAGCGCAATCGCCGTGCATTGGC 1078
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1011 ACCCTGGCAAATGCCTAAAGAGCAGTTACTGCAGTGGAAACGCAATCGCCGTGCATTGGC 1070
Query 1079 TTATTCAACCGTTGGAACTCTGGATTACATGGCTCCAGAAGTACTGCTAAAGAAAGGATA 1138
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1071 TTATTCAACCGTTGGAACTCTTGATTACATGGCTCCAGAAGTACTCCTAAAGAAAGGATA 1130
Query 1139 TGGAATGGAATGTGATTGGTGGTCTCTCGGTGCAATTTTGTATGAGATGTTAGTTGGGTA 1198
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1131 TGGAATGGAATGTGATTGGTGGTCTCTCGGCGCAATTTTGTATGAGATGTTAGTTGGGTA 1190
Query 1199 TCCCCCATTCTGTTCTGATGACCCCCGTATAACATGCCGCAAGATAATTAATTGGAGGGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCCCCCATTCTGTTCTGATGACCCCCGTATAACATGCCGCAAGATAATTAATTGGAGGGT 1250
Query 1259 ATGCTTGAAATTCCCTGAAGAACCAAAAATATCAGATGAAGCCAGAGACTTGATTGGTCA 1318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1251 ATGCTTGAAGTTCCCTGAAGAACCAAAAATATCAGATGAAGCCAGAGACTTGATTTGTCG 1310
Query 1319 GTTGCTTTGTGATGTTGATTCAAGGTTGGGAACCAGAGGTGTTGAGGAGATAAAGTCGCA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTTGCTTTGTGATGTTGATTCAAGGTTGGGAACCAGAGGTGTTGAGGAGATAAAGTCGCA 1370
Query 1379 TCCATGGTTCAAAGGCACCCCATGGGACAAACTGTATGACATGGAGGCAGCTTATAGACC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TCCATGGTTCAAAGGCACCCCATGGGACAAACTGTATGACATGGAGGCAGCTTATAGACC 1430
Query 1439 CATTGTCGATGGAGAACTAGACACACAAAATTTTGAGAAGTTTCCTGAGGTTGAAGGATC 1498
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1431 CATTGTCGATGGAGAACTAGACACACAAAATTTTGAGAAGTTTCCTGAAGTTGAAGGATC 1490
Query 1499 ACCATCCGAAGCACCACAAGTTGGTCCTTGGAGAAAGATGTTGACGTCCAAGGACACCAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 ACCATCCGAAGCACCACAAGTTGGTCCTTGGAGAAAGATGTTGACGTCCAAGGACACCAA 1550
Query 1559 CTTCATAGGATTTACATTTAAGAAGTCAGACATCACAAGATCAATGGAAAGTTCAGGT-G 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1551 CTTCATAGGATTTACATTTAAGAAGTCAGACATCACAAGATCAATGGAAAGTTCAGGTAG 1610
Query 1618 CG--GACATGAAATCAAATGGATCAGGGGAAGCCCCGTCGTTGATATCATTGTTAGGTCG 1675
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGCAGACATGAAATCAAATGGATCAGGGGAAGCCCCGTCGTTGATATCATTGTTAGGTCG 1670
Query 1676 GATCAATATGGAAGAAGGTGAAGGTGGTGAGTTAAACCACAAGACATAGAGAAGAAATAC 1735
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1671 GATCAATATGGAAGAAGGTGAAGGTGGTGAGTTAAACCACAAGACATAGGGAA-AA-TAC 1728
Query 1736 AAATATTATTGATTTTTTATCCGTTTGCAGTTGTTTTGATCATATGGCGGAGGCAATGGA 1795
||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct 1729 AAATATTATTGATTTTTTATCCGCTTGCAGTTGTTTTGATCATTTGGCAGAGGCAATGGA 1788
Query 1796 G-G-CGATGGTAGTTTTTTAACCACATCACTTATGATGGG-TTCATAAAAACTTCTATTT 1852
| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1789 GAGGCGATGGTAGTTTTTTAACCAGATCACTTATGATGGGGTTCATAAAAACTTCTATTT 1848
Query 1853 CCCCCtttttttttcttgtaacatatttgttttttttttAATCTAAAAAAGAAACTGTAA 1912
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1849 CCT--TTTTTTTTTCTTGTAACATATTTGTTTTTTTTTCAATCTAAAAAAGAAACTGTAA 1906
Query 1913 AGCATGGAAGAATAATTTCTTGAACATTTTTACCCACAAGTTATCAA-TACATCAAAA-- 1969
|||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 1907 AGCATGGAAGAATAATTTCTGGAACATTTT-ACCCACAAGTTATCAAATACATCAAAAAA 1965
Query 1970 TGAAGCTCGCTTTTCTGCC 1988
|||||||||||||||||||
Sbjct 1966 TGAAGCTCGCTTTTCTGCC 1984
> AT4G14350.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr4:8256086-8260787
REVERSE LENGTH=2327
Length=2327
Score = 126 bits (68), Expect = 7e-28
Identities = 160/203 (79%), Gaps = 12/203 (6%)
Strand=Plus/Plus
Query 1077 GCTTATTCAACCGTTGGAACT-CTGGATTACATGGCTCCAGAAGTACTGCT-AAAGAAAG 1134
|||||||| || ||||| ||| || || || || || |||||||| ||| | ||| ||||
Sbjct 1251 GCTTATTCCACAGTTGGCACTCCT-GACTATATTGCCCCAGAAGTTCTGTTGAAA-AAAG 1308
Query 1135 GATATGGAATGGAATGTGATTGGTGGTCTCTCGGTGCAATTTTGTATGAGATG-TTAGTT 1193
||||||||||||||||||||||||||||||| || || ||| ||||||| ||| || ||
Sbjct 1309 GATATGGAATGGAATGTGATTGGTGGTCTCTTGGCGCCATTATGTATGAAATGCTT-GTG 1367
Query 1194 GGGTATCC-CCCATTCTGTTCTGATGACCCCC-GTATAACATGCCGCAAGATAATTAATT 1251
|||| ||| ||| || | ||| |||||||| | | ||| || | |||||| | ||||
Sbjct 1368 GGGTTTCCGCCCTTT-TATTCAGATGACCCAATG-ACAACTTGTAGGAAGATAGTAAATT 1425
Query 1252 GGAGGGTATG-CTTGAAATTCCC 1273
|||| || ||||||||||||
Sbjct 1426 GGAGAA-ATTACTTGAAATTCCC 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98493469290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5