BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487814
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09900.3 | Symbols: EMB2107, RPN5A, MSA | 26S proteasome reg... 2619 0.0
AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase s... 1443 0.0
> AT5G09900.3 | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory
subunit, putative (RPN5) | chr5:3089278-3092595 REVERSE
LENGTH=1678
Length=1678
Score = 2619 bits (1418), Expect = 0.0
Identities = 1587/1665 (95%), Gaps = 25/1665 (2%)
Strand=Plus/Plus
Query 1 GTTCAAGGGGTTGGGAACTCCTGCGATTTATCTGTGCTCAGCTACTCCC-AAAGctctct 59
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct 1 GTTCAAGGGGTTGGGAACT-CTGCGAATTATCTGTGCTCAGCTACTCCCAAAAGCTCTCT 59
Query 60 catctctctc-t-cgtctcctccttctcCATAGTCTAAAGCTTCTTTGTTTTGTCACCAG 117
|||||||||| | ||||||||| ||||||||||| ||||||||| | ||| ||||||||
Sbjct 60 CATCTCTCTCGTCCGTCTCCTCTTTCTCCATAGTTTAAAGCTTCGTCGTTCCGTCACCAG 119
Query 118 AGTTTCAACTACTCGTGCTTTGAGTTTGATTCTCGTTGGATTTTTCACGATGGGAGACAG 177
| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 120 AATTTCAACTA------CTTTGAG-TTGATTCTCGTTGGATTTCTCACGATGGGAGACAG 172
Query 178 CGGGAAGCTTGAGGCGACGGTAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGC 237
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CGGGAAGCTTGAGGCAACGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGC 232
Query 238 GGAAAACGTCGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGAAGC 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 233 CGAAAACGTAGCCGGTACAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGC 292
Query 298 TAAGGATTGGAAGCTTCTGAATGAGCAGATTCTCAATCTGTCTAAGAAACGTGGTCAGCT 357
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 293 TAAGGATTGGAAACTTCTGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCT 352
Query 358 CAAACAGGCTGTGCAATCCATGGTGCAGCAAGCTATGCAGTATATTGATCAGACACCAGA 417
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 353 CAAACAGGCTGTGCAATCCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGA 412
Query 418 CATTGAAACTCGGATAGAGCTTATTAAGACATTGAACAATGTATCTGCTGGAAAGATATA 477
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 413 CATTGAAACTCGGATAGAGCTTATCAAGACGCTGAACAATGTATCTGCTGGAAAGATATA 472
Query 478 TGTTGAAATCGAGAGGGCACGCCTCACCAAGAAGCTTGCTAAGATTAAGGAAGAACAGGG 537
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 473 TGTTGAAATCGAGAGGGCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGG 532
Query 538 TCAAATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGCGCTAT 597
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 533 TCAGATAGCTGAAGCTGCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTAT 592
Query 598 GGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGCAAAAACTGAGAAAATTGCATTTATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCA 652
Query 658 AGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGATGCAGA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 653 AGATTTTGTTCGTGCACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGA 712
Query 718 CACAAAGAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCTGC 777
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 TACAAAAAAAGATAAGAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGC 772
Query 778 TGATATACCAA-CCTTGTTGGAGCTTAAGCGGATTTACTACGAGCTTATGATTCGGTACT 836
||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 773 TGATATACCAACCCTT-TTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACT 831
Query 837 ATACTCATAACAATGAGTACCTTGAAATCTGCCGTAGCTACAAGGCGATTTATGATATCC 896
|| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 832 ATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCC 891
Query 897 CTTCTGTAAAAGAAACACCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCT 956
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCT 951
Query 957 TGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGTCTTGGCACCTCATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTGGAAGACA 1011
Query 1017 AGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGAATTTATCAGAAATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGG 1071
Query 1077 TTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTATTCAATGGACATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCA 1131
Query 1137 TGGTTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAAC 1196
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGATTGGAGGTTCTTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAAC 1191
Query 1197 AT--AATAT-TCTT-GTTGTCTCAAAGTATTACGCAAGGATAACCTTAAAGAGACTTGCC 1252
|| || || || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1192 ATGTAAAATATCCTCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCC 1251
Query 1253 GAGCTTTTATGCCTGAGCATAGAGGAGGCGGAGAAGCATCTGTCGGAGATGGTAGTGTCA 1312
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1252 GAGCTTTTATGCCTGAGCATGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCA 1311
Query 1313 AAAGCACTGATTGCAAAAATAGACAGACCATCAGGGATTGTGTGCTTCCAGATCGCAAAG 1372
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1312 AAAGCACTGATTGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGCAAAG 1371
Query 1373 GACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTTTAGATCTTGTC 1432
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1372 GACAGCAACGAGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTG 1431
Query 1433 GAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAAAAGAGTTGCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCT 1491
Query 1493 TGAAAACAA-CATGTAT-CTTCATGAAA-CTTATTTCAGGATCTTCTTCGTTGAGTTATC 1549
|||||||| | || | |||||||||| ||| || |||||||||||||||||||||||
Sbjct 1492 TGAAAACATGCG-GTCTTCTTCATGAAAACTT-TT-CAGGATCTTCTTCGTTGAGTTATT 1548
Query 1550 AGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAACT-GTACTATGGTT 1608
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1549 AGCATCTTTATGTGGTAAAAACTCGAATCAGTGTTTCCTTTTAAAAATTGTACTATGGAT 1608
Query 1609 GTGTACACTAACGAAGTTTTTTGCCACTT-TTGGTTATTTCAAGT 1652
|||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1609 CTGTACACTAACGAAGTGTTTTGCCACTTATTGGTTATTTCAAGT 1653
> AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase
subunit 5B | chr5:25893780-25896582 REVERSE LENGTH=1713
Length=1713
Score = 1443 bits (781), Expect = 0.0
Identities = 1134/1307 (87%), Gaps = 14/1307 (1%)
Strand=Plus/Plus
Query 200 GATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCGGAAAACGTCGCCGGTACAAGG 259
|||||||| ||||| |||||||| |||||||| ||||| ||||| |||||||| || ||
Sbjct 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230
Query 260 AAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGAAGCTAAGGATTGGAAGCTTCTGAAT 319
||||| || || ||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290
Query 320 GAGCAGATTCTCAATCTGTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATG 379
|| |||||| | ||||| || ||||||||||||||||| || |||||||| |||||||||
Sbjct 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350
Query 380 GTGCAGCAAGCTATGCAGTATATTGATCAGACACCAGACATTGAAACTCGGATAGAGCTT 439
||||| ||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410
Query 440 ATTAAGACAT-TGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACG 498
|||||||| | | ||||||||| ||||||||||||||||||| ||||||||||| || ||
Sbjct 411 ATTAAGAC-TCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469
Query 499 CCTCACCAAGAAGCTTGCTAAGATTAAGGAAGAACAGGGTCAAATAGCTGAAGCTGCAGA 558
| ||||||| |||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529
Query 559 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGCGCTATGGCAAAAACTGAGAAAATTGC 618
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589
Query 619 ATTT-ATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAA 677
||| || ||||||||||| |||||||| ||||||| |||||||||| ||||||||||
Sbjct 590 -TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAA 648
Query 678 TCTTATCTAGGAAGATCAATCCTAGAGTTTTTGATGCAGACACAAAGAAAGATAAGAAGA 737
| ||||||||||||||||| || ||||| ||||||||||| || | ||| || || ||||
Sbjct 649 TTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGA 708
Query 738 AACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCTGCTGATATACCAACCTTGTTGG 797
| |||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||
Sbjct 709 AGCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGG 768
Query 798 AGCTTAAGCGGATTTACTACGAGCTTATGATTCGGTACTATACTCATAACAATGAGTACC 857
||| || ||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 769 TGCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACA 828
Query 858 TTGAAATCTGCCGTAGCTACAAGGCGATTTATGATATCCCTTCTGTAAAAGAAACACCG- 916
|||| || |||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 829 TTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAA-ACCCA 887
Query 917 GAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGAC 976
|| || |||||||| |||||||| ||||| |||||||| |||| ||||||||| |||||
Sbjct 888 GAACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGAT 947
Query 977 CCAATGCAATCAAGCTTGCTCAATGCAACTCT-GGAAGACAAGAATTTATCAGAAATCCC 1035
||||||||||| ||| | ||||||||||| || |||||| || || |||||||| || ||
Sbjct 948 CCAATGCAATCGAGCCTACTCAATGCAAC-CTTGGAAGATAAAAAGTTATCAGAGATTCC 1006
Query 1036 TGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCT 1095
||||||||||||||||||||||||| | || ||||||||||| ||||| |||||||||||
Sbjct 1007 TGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCT 1066
Query 1096 GTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGGTTGGAGGTTCTTTGGG 1155
||||| ||||||||||| ||||| ||||| ||||||| |||| ||||||| ||||||||
Sbjct 1067 CTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGG 1126
Query 1156 TGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATTCTTGTTGTCTC 1215
||||||||||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 1127 TGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTC 1186
Query 1216 AAAGTATTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCA-TAG 1274
|||||| ||| ||||||| ||||| ||||||||||| || ||||||||||| | || | |
Sbjct 1187 AAAGTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACT-G 1245
Query 1275 AGGAGGCGGAGAAGCATCTGTCGGAGATGGTAGTGTCAAAAGCACT-GATTGCAAAAATA 1333
|||| || ||||||||||| || || ||||| ||||| ||||| || ||| ||||||||
Sbjct 1246 AGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGC-CTTGATAGCAAAAATC 1304
Query 1334 GACAGACCATCAGGGATTGTGTGCTTCCAGATCGC-AAAGGACAGCAACGAGATTCTAAA 1392
|||||||||||||| || | ||||||||||| | |||| |||||||||| || || ||
Sbjct 1305 GACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAG-ACAGCAACGAAATCCTCAA 1363
Query 1393 CTCGTGGGCAGGGAATTTGGAGAAGCTTTTAGATCTTGTCGAAAAGAGTTGCCACCAAAT 1452
|||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1364 CTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAAT 1423
Query 1453 TCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAAC 1499
|||||| ||||| |||||||| |||| || || ||| ||||| |||
Sbjct 1424 TCACAAAGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAAC 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5