BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487817 Length=626 Score E Sequences producing significant alignments: (Bits) Value AT5G09920.1 | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | R... 911 0.0 > AT5G09920.1 | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096183-3097575 FORWARD LENGTH=715 Length=715 Score = 911 bits (493), Expect = 0.0 Identities = 537/559 (96%), Gaps = 0/559 (0%) Strand=Plus/Plus Query 1 TTTAGGTTTCGATTTCCCTCCTTGGTAATTGCCATGTCCGGAGAAGAAGAAGAGAACGCC 60 |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 TTTAGGGTTCGATTTCGCTCCTTGGTAATCACCATGTCCGGAGAAGAAGAAGAGAACGCC 120 Query 61 GCCGAACTCAAGATCGGAGATGAGTTTTTGAAGGCAAAGTGCTTAATGAATTGTGAAGTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 GCCGAACTCAAGATCGGAGATGAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTC 180 Query 121 TCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAACAAGTCTCAGAGGATCCTATGAAT 180 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 181 TCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAGCAAATCTCAGAGGATCCTATGAAT 240 Query 181 CAAGTTTCTCAAGTGTTTGAGAAGTCCTTGCAATATGTGAAGCGATTCAGCCGGTACAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 CAAGTTTCTCAAGTGTTTGAGAAGTCCTTGCAATATGTGAAGCGATTCAGCCGCTACAAG 300 Query 241 AATCCAGACGCTGTTAGACAAGTTCGAGAAATACTGAGCAGACATCAACTCACTGAGTTT 300 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 AATCCAGATGCTGTTAGACAAGTTCGAGAAATACTAAGCAGACATCAACTCACTGAGTTT 360 Query 301 GAGCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCAATGGTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAGCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCAATGGTT 420 Query 361 CCTTCTCTTAAGACAAAAGGAAGAGCTCATGATGATGAAGCAATTGAGAAGATGCTTAAT 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 421 CCTTCTCTTAAGACAAAAGGAAGAGCTCATGATGATGAAGCTATTGAGAAGATGCTCAAT 480 Query 421 GATCTCTCTCTTGTCAAGAGATTCGAGTAGTGCAGAAGATTCTCAAGATCTTAGACTAAG 480 |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | | Sbjct 481 GATCTCTCACTTGTCAAGAGATTCGAGTAGTGCAGAAGATTCTCAAGATCTAAGATTCTG 540 Query 481 AACATTTGGCAGGATGCTTTACTTGCCTTCTCGCTGATCTGGAGTTAATTTTCCATGTCT 540 ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||| Sbjct 541 AACATTTAGCAGGATGCTTTACTTGCCTTCTAGCTGATCTGGAGTTAATTCGCCACGTCT 600 Query 541 GAAATTATAAAGCTTTAAT 559 ||||||||||||||||||| Sbjct 601 GAAATTATAAAGCTTTAAT 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30190722347 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5