BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487822

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09990.1 | Symbols: PROPEP5 | elicitor peptide 5 precursor |...   518    2e-146


> AT5G09990.1 | Symbols: PROPEP5 | elicitor peptide 5 precursor 
| chr5:3124568-3125076 FORWARD LENGTH=416
Length=416

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 341/370 (92%), Gaps = 5/370 (1%)
 Strand=Plus/Plus

Query  13   GAGGAGA-TTATAAGATAGAGATGATGCAGCAAGAGGGAGATAACAAAAGAGATTGTTGC  71
            ||||| | ||| ||||||| || ||||||||||||| ||||| |||||||||||||||||
Sbjct  33   GAGGA-ACTTAGAAGATAGCGAAGATGCAGCAAGAGAGAGATCACAAAAGAGATTGTTGC  91

Query  72   AAGCTCATGCCTCAAACGGTCAAGGGTTTTTTCAAGTGTCTGAGATTCAGACG---TTCA  128
            ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||   ||| 
Sbjct  92   AAGCTCATGCCTCAAACTGTCAAGGCTTTCTTCAAGTGTCTGAGATTCAGACGTTCTTCT  151

Query  129  TCTTCTTCTTCAGACATGGTGAAATCTAAAGCAAGAAATGAGGAGAAAGAAGAAGCTTCA  188
            |||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||
Sbjct  152  TCTTCTTCTTCAGACATGGTGAAAGCTAGAGCAAGAAATGAAGAGAAAGAAGAACCTTCA  211

Query  189  TCTATCGAAACTTCAACGAGGAGTCTCAACGTAATGAGGAAAGGGATAAGGAAACAACCG  248
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  212  TCTATCGAAACTTCAACTAGGAGTCTCAACGTAATGAGGAAAGGGATAAGGAAACAACCA  271

Query  249  GTTAGCTCGGGAAAACGAGGTGGAGTTAACGACTACGACATGTAACTAGAATCTTGATGT  308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  GTTAGCTCGGGAAAACGAGGTGGAGTTAACGACTACGACATGTAACTAGAATCTTGATGT  331

Query  309  AGAATTGGATAATCTTGTTTAGTAGTCACTCTAAAAGAAACTTGCTTTGCGCCTCATGAA  368
            |||||||||||||||||||| ||||| |||||| || | |||| ||||||  ||||||||
Sbjct  332  AGAATTGGATAATCTTGTTTGGTAGTTACTCTACAACATACTTTCTTTGCATCTCATGAA  391

Query  369  TCATCACGAT  378
            |||||| |||
Sbjct  392  TCATCATGAT  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5