BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487824
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09995.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1358 0.0
> AT5G09995.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G08530.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:3125077-3126378 REVERSE LENGTH=958
Length=958
Score = 1358 bits (735), Expect = 0.0
Identities = 887/958 (93%), Gaps = 19/958 (2%)
Strand=Plus/Plus
Query 1 CATTGTTATCGTCGACTCGGAGCTTAACAATGGCTTCTGACGACTAGAGCTAAAACCATT 60
||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 13 CATTGTTATCGTCGACTCGAAGCTTAACAATGGTTTCTGACGAATAGAGCTAAAACCATT 72
Query 61 CACAATGTTGTTCTCACCCTCGAATTTACAATCACCCGAACCTATAATCTTC-AGGAATC 119
||||||||| ||||| || ||||| || ||||||||| || || ||||| || ||||||
Sbjct 73 CACAATGTTATTCTCGCCTTCGAAATTGCAATCACCCCAATCTCTAATC-TCTTGGAATC 131
Query 120 CGATTCTCCATTACGGATTCATCGATAAAAATCTTTCCTTTCGCCGACGGGACACTCTCC 179
||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 132 CGATTCTCCATAACGGATTCATCGATAAAAATCTCTCCTTTCGCCGACGGGTCACTCTCC 191
Query 180 GGCTAGCTTTTCCGATTTCACGATTCACAAAGGGTTCAGACTCAATCGCGTCTACTTCTC 239
||||||||| |||||||||||||| || |||||||||||||||||||| ||| || |||
Sbjct 192 GGCTAGCTTCACCGATTTCACGATTGACCAAGGGTTCAGACTCAATCGCATCTTCTACTC 251
Query 240 CCTCTCCATTGTACTCGAATCCGCAGGAGCCATCGATATCTTCCCAATTCACGTCGTCCG 299
||||| |||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 252 CCTCTGCATTGTACTCGAATCCTCAGGAGCCATCGATCTCTTCCCAATTAACATCGTCCG 311
Query 300 TGGGACAGCCTCCTCTCCAACTCTCTCAATGGACATTCACACAGAAGCACTTCGTCTTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGGGACAGCCTCCTCTCCAACTCTCTCAATGGACATTCACACAGAAGCACTTCGTCTTGC 371
Query 360 TCAATGTCGTCGCTTGCGTAACAGCAATTTCAGCATCGTGGCTCTTCTTTGCTGCGATTC 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TCAATGTCGTCGCTTGCGTGACAGCAATTTCAGCATCGTGGCTCTTCTTTGCTGCGATTC 431
Query 420 CTACTCTTCTGGCTTTCAAGAAAGCAGCTGAGTCTCTTGAAAAGCTTTTGGATGTAACCA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 432 CTACTCTTCTGGCTTTCAAGAAAGCAGCTGAGTCTCTTGAAAAGCTTTTGGATGTAACTA 491
Query 480 GAGAAGAGCTACCAGATACAATGGCCGCTGTTCGTTTATCGGGAATGGAGATCAGTGACT 539
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 492 GAGAAGAGCTACCAGATACAATGGCTGCTGTTCGTTTATCGGGAATGGAGATCAGTGACT 551
Query 540 TAACTATGGAGCTCAGTGATTTAGGCCAAGGTATCACTCAAGGTGTTAAAAGCTCAACAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 552 TAACTATGGAGCTCAGTGATTTAGGCCAAGGTATCACTCAAGGTGTTAAAAGCTCGACAC 611
Query 600 GGGCTATTCGCGTAGCTGAAGATAGACTAAGACGGTTAACAAACACGAATCCAGTAGCTT 659
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 GGGCTATTCGTGTAGCTGAAGATAGACTAAGACGGTTAACAAACATGAATCCAGTAGCTT 671
Query 660 CAATGCAGGAGGTGATGCATCGAACCAAGACAGA-GAAAACAGAACCAATGGTGGCTAAA 718
|||||||||||||||||| || |||||||||||| |||| ||||||||||| ||||||||
Sbjct 672 CAATGCAGGAGGTGATGCGTCAAACCAAGACAGATGAAA-CAGAACCAATGTTGGCTAAA 730
Query 719 AAAGCGAGGAGCTTAA-AGGAAGG-GATAGTTAAAGGACGTTCGTTATGGCAATTGTTGT 776
||||||||||||| | || |||| | | ||||| ||||| || |||||||||||||| |
Sbjct 731 CAAGCGAGGAGCTTTAGAG-AAGGTGTT-GTTAAGGGACGCTCTTTATGGCAATTGTTCT 788
Query 777 CCACAGTCACTCGTTTCTCCAAAA-CGGCAACAAGTTATCTTGCAAAGCGAGCTAAGCAG 835
||||| ||||||||||||| |||| | | |||||||||||||||||||| |||||||||
Sbjct 789 CCACAATCACTCGTTTCTCTAAAATCA-CTACAAGTTATCTTGCAAAGCGTGCTAAGCAG 847
Query 836 TAGAAGCATAGAAGGTGATCAATCAGATCCCACTTTTCTCTT-ACCCtttttttAGAGTC 894
||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 848 TAGAAGCCTAGAAGGTGATCAATCAGATGCCACTTTTCTCTTTACCCTTTTTC-AGAGTC 906
Query 895 CGAGTCTAGCTTGAGTCTTTCTAGCTTAAGAGTGTAATTTGATTGATATGAAATTATG 952
|| || | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 907 CG---CT---T-GAGTCTTTCTAGCTTAAGAGTGTAATTTGATTGATTTGAAATTATG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5