BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487826
Length=1684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2442 0.0
AT5G64910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 453 2e-126
> AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64910.1); Has
33260 Blast hits to 16857 proteins in 1270 species: Archae
- 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants
- 1371; Viruses - 424; Other Eukaryotes - 13285 (source:
NCBI BLink). | chr5:3127906-3131727 FORWARD LENGTH=1772
Length=1772
Score = 2442 bits (1322), Expect = 0.0
Identities = 1579/1696 (93%), Gaps = 46/1696 (3%)
Strand=Plus/Plus
Query 27 aaaaaaaaaagataaaataaaa-aataaacaaaaacccccaaatttgtgtctcctcc-ga 84
||||| |||||||||||||||| || |||| |||||||||||||||||||||||||| ||
Sbjct 18 AAAAAGAAAAGATAAAATAAAATAAAAAAC-AAAACCCCCAAATTTGTGTCTCCTCCGGA 76
Query 85 aaaaaaattcgaaatTCCGGATCCACCGCCATCAATCCCTAGCTTTCTCTCT-TTCTCTC 143
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 77 AAAAAAATTCGAAATTCCGGATCCACCGCCATCAATCCCTAGCTTTCTCTCTCTT-TCTC 135
Query 144 AATCCTCGCCGGCGAAGCCAGTAGGGTTTCTCAATTCGTTCTTAGAGTAGTGTGGCAATG 203
||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 136 TATCTTCGCCGGCGAAACCAGTAGGGTTGCTCAATTCGTTGGTAGAGTACTGTGGCAATG 195
Query 204 AGGAAAGGAGCGAAGAGAAAGGGTGTTTCGAAAGCTGGTCGCAAAGGTGCTGTTGCGGAG 263
| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 196 AAGAAAGGAGCGAAGAGAAAGGGTGTTTCGAAAGCAGGTCGCAAAGCTGCTGTTGCGGAG 255
Query 264 ACTCAGACCGATGAGGTGATAGA-G-GA-GAC---GACGACGCAGGAGGAGAGTCAACAG 317
||||||| ||||||||||||||| | || ||| |||||||||||||||||||||||||
Sbjct 256 ACTCAGAACGATGAGGTGATAGAGGAGACGACGAAGACGACGCAGGAGGAGAGTCAACAG 315
Query 318 CCTAAGGAAGAAGTCGTCGACgagaagaaggagaatggggaagaagaggaggccaaggga 377
| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 316 CATGAGGAAGAAGTCGTCGACGAGGTGAAGGAGAATGGGGAAGAAGAGGAGGCTAAGGGA 375
Query 378 gatcaagaggacgaagaggaggCGAAACCTGATTCCTTAGAGAAGGAGGAGGAGGAGAAT 437
||||||||||| |||||||| ||||||||||||||||| || ||||||| |||||||||
Sbjct 376 GATCAAGAGGAAGAAGAGGATGCGAAACCTGATTCCTT--AG-AGGAGGATGAGGAGAAT 432
Query 438 CAGGAAGATGAGGTCAAAGCCGACGAAGTAAAGGAAGAAGATGAGAAGAAACCTGTTGCT 497
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 433 CAGGAAGATGAGGTCAAAGCTGAGGAAGTAAAGGAAGAAGTTGAGAAGAAACCTGTTGCT 492
Query 498 CGTCGTGGTGGTAAACGAAAGAGGGCTACGAAGAAGGAAACTGAGGTTAAAGATGAGAAG 557
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 493 CGTCGTGGTGGTAAACGAAAGAGGGCTACGAAGAAGGATACTGAGATTAAAGATGAGAAG 552
Query 558 AAACC-GATTCCGAGTGTTAAGAAACCGAGAGTGGCCAAAGTTAAGGAAGAGCCTGTCTA 616
||||| | |||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 553 AAACCTG-TTCCGAAAGCTAAGAAACCGAGAGCGGCCAAAGTTAAGGAAGAGCCTGTCTA 611
Query 617 CTTTGAGGAGAAGCGTAATCTGGAGGATTTGTGGAAGGTTGCATTTCCAGTGGGAACTGA 676
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CTTCGAGGAGAAGCGTAGTCTGGAGGATTTGTGGAAGGTTGCATTTCCAGTGGGAACTGA 671
Query 677 GTGGGATCAGTTAGATGCACTTTATGAATTCAATTGGGATTTCCAAAATCTTGAAGAAGC 736
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GTGGGATCAATTAGATGCACTTTATGAATTCAATTGGGATTTCCAAAATCTTGAAGAAGC 731
Query 737 ATTGGAGGAAGGAGGAAAGCTCTATGGGAAGAAGGTTTATGTTTTTGGCTGTACAGAACC 796
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 732 ATTGGAGGAAGGAGGAAAGCTCTATGGGAAGAAGGTTTATGTCTTTGGCTGTACAGAACC 791
Query 797 TCAATTAGTACCCTACAAAGGTGCAAACAAGATTGTCCATGTCCCTGCTGTTGTTGTGAT 856
|||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 792 TCAACTAGTCCCCTACAAAGGCGCAAACAAGATTGTCCATGTCCCAGCTGTTGTTGTTAT 851
Query 857 TGAATCTCCTTTTCCGCCTTCTGATAAGATAGGGATCACATCTGTTCAGAGAGAAGTGGA 916
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 852 TGAATCACCCTTTCCGCCTTCTGATAAGATAGGAATCACATCTGTTCAGAGAGAAGTGGA 911
Query 917 GGAAATCATTCCAATGAAGAAGATGAAAATGGATTGGCTTCCTTACATTCCGATTGAAAA 976
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 912 GGAAATCATTCCAATGAAGAAGATGAAAATGGACTGGCTTCCATACATTCCGATTGAGAA 971
Query 977 AAGAGATAGACAAGTGGATAAGATGAACTCCCAAATTTTTACCTTGGTTTGTACTCAGAG 1036
||||||||||||||||||||||||||| || ||||||||||| |||| |||||| |||||
Sbjct 972 AAGAGATAGACAAGTGGATAAGATGAATTCTCAAATTTTTACTTTGGGTTGTACGCAGAG 1031
Query 1037 GAGATCTGCTCTCAGACATATGAAGGAAGATCAACTTAAGAAATTTGAGTATTGCCTTCC 1096
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1032 AAGATCTGCTCTCAGACATATGAAGGAAGATCAACTTAAGAAGTTTGAGTATTGCCTTCC 1091
Query 1097 TTATTTCTATCAACCCTTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCAAATAAT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TTATTTCTATCAACCCTTTAAGGAAGATGAACTTGAACAGAGTACTGAGGTCCAAATAAT 1151
Query 1157 GTTCCCCTCTGAACCCCCGGTTGTATGTGAATTTGACTGGGAGTTTGACGAACTTCAGGA 1216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1152 GTTCCCCTCTGAACCCCCGGTTGTATGTGAATTTGACTGGGAGTTTGATGAACTTCAGGA 1211
Query 1217 ATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAACGGATGAATTCAA 1276
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1212 ATTTGTCGATAAACTGGTTGAAGAGGAAGCATTACCTGCTGAACAAGCGGATGAATTCAA 1271
Query 1277 AGAATATGTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATCGAGAAGCCAAAGATGC 1336
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1272 AGAATATGTCAAAGAGCAAGTTCGAGCAGCAAAGAAAGCAAATCGAGAGGCCAAAGATGC 1331
Query 1337 TCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAGATGAA 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 TCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCCTTTCAAAAGATGAA 1391
Query 1397 GTTCTACAAATTCTACCCCCAGCCTTCACCAGATACACCAGACGTCTCAGGTGTCAAGTC 1456
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1392 GTTCTACAAATTCTACCCTCAGCCTTCACCAGATACACCAGACGTCTCTGGTGTCCAGTC 1451
Query 1457 CCCGTTCATTAATCGATACTATGGAAAGGCTCATGAAGTCCTTTGAGATCAGAAGCTTT- 1515
||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1452 CCCATTCATTAACCGATACTATGGAAAGGCTCATGAAGTCCTTTGAGATCAGATGATCAG 1511
Query 1516 -TCTT-G-G---C-AG----CTT--C----A-GC---AG-A-AA-TCAAAGTTATTT--A 1549
| || | | | || ||| | | || || | || |||||||||||| |
Sbjct 1512 ATGTTTGAGAAGCCAGAAAGCTTTTCTTGGAAGCTTCAGCAGAAATCAAAGTTATTTTTA 1571
Query 1550 ATCACAGGTGCTCTCAGAAACTCTTTGAGCTATTATAGTTATAAAGCCAAGTTTGTAGGA 1609
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1572 ATCACAGGTGCTCTCAGAAACTCTTTGAGCTTTTATAGTTATTAAGCCAAGTTTGTAGGA 1631
Query 1610 CAAAATGTCTTTTACTTTTATGAGTTTGTATTC-CCTTCCAAAAGTACTTGAGATCTTAG 1668
||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||
Sbjct 1632 CAAAATGTCTTTTACTTTTATGAGTTTGTATTCTCCT-CGGGA-GTACTTGAGATCTTAG 1689
Query 1669 AAGAGTCCCGGGAACC 1684
||||||| ||||||||
Sbjct 1690 AAGAGTCACGGGAACC 1705
> AT5G64910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G10010.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:25940711-25944114 FORWARD LENGTH=1547
Length=1547
Score = 453 bits (245), Expect = 2e-126
Identities = 663/858 (77%), Gaps = 56/858 (7%)
Strand=Plus/Plus
Query 606 GAGCCTGTCTACTTTGAGGAGAAGCGTAATCTGGAGGATTTGTGGAAGGTTGCATTTCCA 665
||||||| ||||| || ||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 609 GAGCCTGAGTACTTCGAAGAGAAGCGTAATCTGGAGGATTTGTGGAAGGCTACATTTTCA 668
Query 666 GTGGGAACTGAGTGGGATCAGTTAG-ATGCACTTTATGAATTCAATTGGGATTTC-CAAA 723
|||||||| |||||||| || || |||||||| |||||||||| |||||||| ||||
Sbjct 669 GTGGGAACGGAGTGGGACCAAC-AGGATGCACTTAATGAATTCAACTGGGATTTTACAAA 727
Query 724 ATCTTGAAGAAGCAT-TGGAGGAAGGAGGAAAGCTCTATGGGAAG-AAGGTTTATGTTTT 781
|||||||||||| | |||||||||| ||| |||||||||||||| ||| | ||||||||
Sbjct 728 -TCTTGAAGAAGC-TCTGGAGGAAGGTGGAGAGCTCTATGGGAAGCAAG-TCTATGTTTT 784
Query 782 TGGCTGTACAGAACCTCAATT-AGTACCCT-ACAAAGGTGCAAACAAG-ATTGTCCATGT 838
|||||| || || |||| || ||| | || |||||| || ||||||| || |||| |||
Sbjct 785 TGGCTGCACTGAGTCTCA-TTCAGT-CACTTACAAAGATGAAAACAAGGAT-GTCCTTGT 841
Query 839 CCCTGCTGTTGTT-GTGATTGAATCTCCTTTTCCGCCTTCTGATAAGATAGG-GATCACA 896
|||| ||| ||| || ||||| || ||| |||| ||||||||| ||||||| | | ||
Sbjct 842 TCCTGTTGTCGTTTGT-ATTGATTCACCTATTCCCCCTTCTGATGAGATAGGAGTTG-CA 899
Query 897 TCTGTTCAGAG-AGAAGT-GGAGGAAATCATTCCAATGAAGAAG-ATGAAAATGGATTGG 953
|| ||||| || ||| || || |||||| ||| ||||||| || |||||||||| ||||
Sbjct 900 TCGGTTCA-AGGAGAGGTTGG-GGAAATTATTGCAATGAA-AACTATGAAAATGGCTTGG 956
Query 954 CTTCCTTACATTCCGA-TTGAAAAAAGAGATAGACAAGTGGATAAGATGAACTC-CCAAA 1011
|||||||||| || | ||||| |||| ||||||||||| ||||| | ||||| ||||
Sbjct 957 GTTCCTTACATCCC-ACTTGAACAAAGGGATAGACAAGTTGATAATAAGAACTTTCCAA- 1014
Query 1012 TTTTTACCTTGGTTTGTACTCAGAGGAGATCTGCTCTCAGACATATGAAGGAAGATCAAC 1071
|||| | ||||| ||||||||||| || |||||||||| |||| || || ||||
Sbjct 1015 TTTTCATCTTGGGCTGTACTCAGAGAAGGTCTGCTCTCAAACATTTGCCTGACGATCGTG 1074
Query 1072 TTAAGAAATTTGAG-TATTGCCTTCCTTATTTCTATCAACCCTT-TAAGGAAGATGAACT 1129
|||| ||| || | |||||||||||||| || | |||||| | ||||| ||||| ||
Sbjct 1075 TTAA-AAAGTTCAACTATTGCCTTCCTTACATCAA-CAACCCATATAAGGTTGATGA-CT 1131
Query 1130 -TGA-ACAGAGTACTGAGGTCCAAATAATGTTCCCCTCTGAACCCCCGGTTGTATGTGAA 1187
||| | |||| |||| ||| ||||||||||||| ||||| || || |||| |||||||
Sbjct 1132 CTGAGA-AGAGCACTGTGGTTAAAATAATGTTCCCTTCTGAGCCACCAGTTGAATGTGAA 1190
Query 1188 TTTGACTGGGAGTTT-GACGA-ACTTCAGGAATTTGTCGATAAACTGGTTGAA-GAGGAA 1244
| |||||||| | | || | || ||||||| ||| | ||| | || |||||
Sbjct 1191 TATGACTGGGTGAAAAG-CGTCA-TTGAGGAATTCACCGACAGTCTGATC-AATGAGGAG 1247
Query 1245 GCATTACCTGCTG-AACAAACGGATGAATTCAAAGAATATGTCAAAGAGCAA-GTTCGAG 1302
| ||||| | | | |||||| || || ||| | || | |||||||||| || || ||
Sbjct 1248 GTATTAC-TCCCGGAACAAAAGGTTGCGTTCGAGGAGTTTGTCAAAGAGAAAAGT--GA- 1303
Query 1303 CA--GCAAAGAAAGCAAATCGAGAAGCCA-AAGATGCTCGAAAGAAAGCAATAG-AAGAA 1358
|| || | | ||| || || | | || |||| || | | ||||||||| || ||| |
Sbjct 1304 CAAAGCTATGGCAGCTTAT-GACACGGCACAAGAAGCCCTAGAGAAAGCAA-AGGAAGGA 1361
Query 1359 ATGAGCGAAGATACTAAGCAAGCCTTTCAA-AAGATGAAGTTCTACAAATTCTACCCCCA 1417
|||||||||| || || |||||| |||| || |||| ||| ||||| || || ||
Sbjct 1362 CTGAGCGAAGAAACAAAAAAAGCCTATCAAGAA-ATGAGGTTGTACAAGTTTTATCCATT 1420
Query 1418 GCCTTCACCAGATACACC 1435
|||||||||||| |||||
Sbjct 1421 GCCTTCACCAGACACACC 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83232503610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5