BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487829
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10030.1 | Symbols: TGA4, OBF4 | TGACG motif-binding factor ... 2194 0.0
> AT5G10030.1 | Symbols: TGA4, OBF4 | TGACG motif-binding factor
4 | chr5:3137323-3140252 REVERSE LENGTH=1675
Length=1675
Score = 2194 bits (1188), Expect = 0.0
Identities = 1328/1394 (95%), Gaps = 15/1394 (1%)
Strand=Plus/Plus
Query 29 CTTCTTCGAGATGACAAGTTCAGAGAAGGAGATTTTATCATCCCTTCTGCTCTCGA-ACC 87
||||||||||||||||||||||||||| ||||||||| |||||||| | || || | |||
Sbjct 40 CTTCTTCGAGATGACAAGTTCAGAGAACGAGATTTTACCATCCCTTATTCTATC-AGACC 98
Query 88 GGTTTAAGCTGCAGATTTCTAGGCCTT-GCGTTCGATTTAGCCGCTGAAAGTGAAAAGTT 146
||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||
Sbjct 99 GGTTTAAGCTGCAGATTTCTAGG-CTTAGCGTTCGATTTCGTCGCTGAAAGTGAAAAGTT 157
Query 147 CCT-TTGCTTTTGTTCTTTTCTTTCCATGGTTTCCGCGGGAAAAGTTCGTC-TTTTTGAA 204
| | | ||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 158 CATCTAGCTTTAGTT-TTCTCTTTTCATGGTTTCCGCGGGAAAAGTTCGTCTTTTTTGAA 216
Query 205 GCCCTTTTGACACAAAAGACCAGAAGAAGTTGAAGAAACATGAATACAACATCGACACAT 264
||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 217 GCCCTTTTGACACAAAAGACCAGAACAAGTTGAAGAAATATGAATACAACCTCGACACAT 276
Query 265 TTTGTTCCATCGAGAAGGTTTGAAGTTTACGAGCCTCTCAACCAAATCGGTATGTGGGAA 324
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTTGTTCCACCGAGAAGGTTTGAAGTTTACGAGCCTCTCAACCAAATCGGTATGTGGGAA 336
Query 325 GAAAGCTTCAAGAACAATGGAGGCATGTATACGCCTGGCTCTATCATAATCCCGACAAAC 384
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 337 GAAAGTTTCAAGAACAATGGAGACATGTATACGCCTGGCTCTATCATAATCCCGACTAAC 396
Query 385 GAAAAACCAGACAGCTTGTCGGAGGATACTTCTCATGGGACAGAAGAAACTCCTCACAAG 444
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 397 GAAAAACCAGACAGCTTGTCAGAGGATACTTCTCATGGGACAGAAGGAACTCCTCACAAG 456
Query 445 TTTGACCAAGAGGCTTCCACATCTAGACATCCTGATAAGATACAGAGAAGGCTTGCACAG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 457 TTTGACCAAGAGGCTTCCACATCTAGACATCCTGATAAGATACAGAGAAGGCTAGCACAG 516
Query 505 AATCGGGAGGCAGCTAGGAAAAGTCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAG 564
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AATCGAGAGGCAGCTAGGAAAAGTCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAG 576
Query 565 ACAAGCCGGTTGAAGCTAATTCATTTAGAGCAAGAACTCGATCATGCTAGACAACAGGGT 624
|| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 577 ACTAGCCGGTTAAAGCTAATTCATTTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGT 636
Query 625 TTCTATGTGGGGAATGGAGTAGATTCCAATGCGCTTGGTTTCTCAGATAACATGAGCTCA 684
|||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 637 TTCTATGTGGGGAACGGAGTAGATACCAATGCTCTTAGTTTCTCAGATAACATGAGCTCA 696
Query 685 GGGATTGTTGCATTTGAGATGGAATATGGACATTGGGTGGAAGAGCAGAACAGGCAAATA 744
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 697 GGGATTGTTGCATTTGAGATGGAATATGGACATTGGGTGGAAGAACAGAACAGGCAAATA 756
Query 745 AGCGAACTAAGAACGGTTTTACATGGACAAGTTAGTGATATAGAGCTTCGTTCGCTAGTC 804
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 757 TGTGAACTAAGAACGGTTTTACATGGACAAGTTAGTGATATAGAGCTTCGTTCTCTAGTC 816
Query 805 GAGAATGCCATGAAACATTACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GAGAATGCCATGAAACATTACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATC 876
Query 865 GATGTCTTT-TATGTCATGTCAGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTG 923
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 877 GATGT-TTTCTATGTCATGTCCGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTG 935
Query 924 GATAGGCGGATTTAGACCCTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATCCCTT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 936 GATAGGCGGATTTAGACCCTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATCCTTT 995
Query 984 GACGGATCAACAACTTTTGGATGTATGTAATCTGAGGAAATCATGTCAACAAGCGGAAGA 1043
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 996 GACGGATCAACAACTTTTGGATGTATGTAATCTGAGGCAATCATGTCAACAAGCAGAAGA 1055
Query 1044 TGCGTTATCACAAGGTATGGAGAAACTGCAACATACATTAGCAGAGAGTGTAGCAGCCGG 1103
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGCGTTATCCCAAGGTATGGAGAAACTGCAACATACATTAGCAGAGAGTGTAGCAGCCGG 1115
Query 1104 AAAACTATGC-GAAGGAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGG 1162
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GAAACT-TGGTGAAGGAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGG 1174
Query 1163 CTCTGGTCAGCTTTGTAAATCAAGCTGATCATCTGAGACATGAGACATTGCAACAGATGC 1222
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 CTTTGGTCAGCTTTGTAAATCAAGCTGATCATCTGAGACATGAGACATTGCAACAGATGC 1234
Query 1223 ATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTATTAGCATTAGGGGAGTATTTCC 1282
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1235 ATCGGATCTTAACCACGCGACAAGCGGCTAGAGGTTTGTTAGCATTAGGGGAGTATTTCC 1294
Query 1283 AGCGGCTTCGAGCTTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTAATCAA 1342
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1295 AAAGGCTTCGAGCTTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTAATTAA 1354
Query 1343 GGTGCTTAGATTTCAACAAAGGTTTGATTGAGTCCTTAAGAATCAAGAATGGAGTTTGCT 1402
|||| |||||| |||| |||||||||| || |||||| ||||||||||||||||||||
Sbjct 1355 GGTGTTTAGATGTCAAGAAAGGTTTGA--GA--CCTTAACAATCAAGAATGGAGTTTGCT 1410
Query 1403 GGTGAATGGATTTT 1416
||||| ||||||||
Sbjct 1411 GGTGAGTGGATTTT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5