BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487831
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10060.1 | Symbols: | ENTH/VHS family protein | chr5:314574... 3040 0.0
AT5G65180.1 | Symbols: | ENTH/VHS family protein | chr5:260453... 811 0.0
> AT5G10060.1 | Symbols: | ENTH/VHS family protein | chr5:3145749-3148379
REVERSE LENGTH=1985
Length=1985
Score = 3040 bits (1646), Expect = 0.0
Identities = 1873/1980 (95%), Gaps = 25/1980 (1%)
Strand=Plus/Plus
Query 1 AAAACTCAACTTTCCTGATTCCTCTCTTCCCTGCGATTTTAGCTCTAGGGATCGATTTCG 60
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 17 AAAACACAAGTTTCCTGATTCCTCTCTTCTCTGCGATTTTAGCTCTAGGGATCGATTTCG 76
Query 61 GCGTCAAACGTCGTCGTTTTTGACTATCT-C--C-TACTACTACTCATCTGCTTCTGCCT 116
|||||||||||||||||||| ||| |||| | | |||||||||||| ||||||||||||
Sbjct 77 GCGTCAAACGTCGTCGTTTTCGACCATCTCCTACTTACTACTACTCAGCTGCTTCTGCCT 136
Query 117 TCTAGGGTTCTTTTTTCTCCGTTCACCCTCCGCCGCACGAGTTGTCCAGCTCCGCCGCAT 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TCTAGGGTTC---TTTCTCCGTTCACCCTCCGCCGCACGAGTTGTCCAGCTCCGCCGCAT 193
Query 177 TCTTCTGTCTCACAGTTCACCGGCTTTAAGCGAATCCGGCTGCTTCTCACTCAAATTCGT 236
||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 194 TCTTCTGTCTCCCAGATCACCGGCTTTAAGCAAATCCGGCTGCTTTTCACTCTAATTCGT 253
Query 237 AAACCACTTG-GAGGATTTGAGCTTCTTTTGCCTACTGGAAAATCTCTACTTTCTAGGGT 295
|||||||||| | |||||||||| |||||| | | || ||||||||| |||||||||||
Sbjct 254 AAACCACTTGTG-GGATTTGAGCATCTTTTACATTCTCCAAAATCTCTGCTTTCTAGGGT 312
Query 296 TTTGTGAGTTTTGGTGGGATGAGTAGTGTGTTCAGTGAACAGATCCTGATTGATAAGCTC 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 313 TTTGTGAGTTTTGGTGGGATGAGTAGTGTGTTCAGTGATCAGATCCTGATTGATAAGCTC 372
Query 356 GCTAAGCTCAATAGCACTCAACAGTGC-ATCGAAACTCTGTCACATTGGTGTATATTCAA 414
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 373 GCTAAGCTCAATAGCAGTCAACAGT-CTATCGAAACTCTGTCACATTGGTGTATATTCAA 431
Query 415 TCGGACCAAAGCTGAATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT 474
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCGGAGCAAAGCAGAATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT 491
Query 475 GGCTCAGAAAGTCCCTCTTATGTATTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCA 534
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGATCAGAAAGTCCCTCTTTTGTATTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCA 551
Query 535 GGGTAATGAGTTCGTGCAAGAGTTCTGGAATGTTCTTCCTAAGGCTGTTAAAGACATTGT 594
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 552 AGGTAATGAGTTTGTGCAAGAGTTCTGGAATGTTCTTCCTAAGGCTCTTAAAGACATTGT 611
Query 595 TTCTCAAGGAGATGATTATGGCAAAAGCGTTGTCTCACGTTTGGTCAAGATATGGGAAGA 654
|||||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||
Sbjct 612 TTCTCAAGGAGATGATAATGGCAAAAGCGCTGTCGCACGTGTGATCAAGATATGGGAAGA 671
Query 655 AAGAAGAGTGTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCTTGGAGAAGATGT 714
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AAGAAGAGTGTTTGGATCACGTTCAAAGAGTCTTAAAGATGTAATGCTTGGAGAAGATGT 731
Query 715 TCCCCTGCCACTTGATATCAGCAAAAAGCGGTCTCGCGGATCCAGATCTGGAAAACGGGA 774
||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 732 TCCTCTGCCACTTGATATCAGCAAAAAGCGGCCTCGCGGATCCAAATCTTCAAAACGGGA 791
Query 775 TTCAAAATCGTCCAGAGCGAAATTATCATCAAGTGGAGGTGTGGCTGAGAAGATAGCATC 834
||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||
Sbjct 792 GTCAAAATCGTCCAGAACGAAATTAGCATCAAGTGGTGGTGTGGCTGAGAAGATAGCATC 851
Query 835 AGCATATCATTTGGTTGTTGCCGAAAACTCAAATGAAGAAGCTGAGATGAATAAATGTAA 894
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 852 AGCATATCATTTGGTTGTTGCAGAAAACTCAAATGAAGAAGCTGAGATGAATAAATGTAA 911
Query 895 GTCCGCAGTTAAACGAATCAGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGC 954
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTCTGCAGTTAAACGAATCCGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGC 971
Query 955 TAAAGACAACCCGAAGAGAAAATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTT 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AAAAGACAACCCGAAGAGAAAATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTT 1031
Query 1015 GAGACAATGTATTGAGAAACTTAAATCTGTCCAAGGAAGTAGAACTTCCCTTGTGAACCA 1074
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1032 GAGACAATGTATTGAGAAACTTAAATCTGTTCAAGGAAGTAGAAGTTCCCTTGTGAACCA 1091
Query 1075 GCTTAAAGATGCATTACGCGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCA 1134
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 GCTTAAAGATGCACTACGTGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCA 1151
Query 1135 GGTCGC-ACTAGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAATGATGAGG 1193
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GGTAGCTAA-AGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAATGATGAGG 1210
Query 1194 ATTACGCATCAAAACCAACAGCTGCTGCCACTACGATAACCGAGACAAATGACAACACAA 1253
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1211 ATTACACATCAAAACAAACAACTGCTGCCACTACGATAACCGAGACAAATGACAACACCA 1270
Query 1254 AATCTGGTCAAGCATCAAAAATGACGCCTGCATCTATTGCTGCGATGCTCACAGCATCAA 1313
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1271 AATCTGGTCAAGCATCAAAAATGACGCCTGCATCTATTGCTGCAATGCTCACAGCGTCAA 1330
Query 1314 CCTCATCACACATGATAATGCAATCTGTTCTATCTTCATTCGCAGCTGAAGCAACAAAGA 1373
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1331 CCTCATCACATATGATAATGCAGTCTGTTCTATCTTCATTCGCAGCTGAAGCAACAAAGA 1390
Query 1374 CTTCTGGTCTATCCAAACCAGAGAGCACAATTCCAGTTTCAGACACTAATGCTTCGTTCC 1433
||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| ||||
Sbjct 1391 CTTCTGGTCTATCCAAATCAGAGAGCACAGTTCCGGTCTCAGACACTAATGCTTCATTCC 1450
Query 1434 CTTCTTACAACAACTCCCAGAATCAGACACCTACCACACAAGGTCAGTACCATGTAATAC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CTTCTTACAACAACTCCCAGAATCAGACACCTACCACACAAGGTCAGTACCATGTAATAC 1510
Query 1494 CTAATCCACCACCACCACAGTTCTTAAAACCACCGGTAATGAACAACCCTTACGGCTTTG 1553
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct 1511 CTAATCCACCACCACCACAGTTCCTAAAACCACCGGTAATGAATAACCCTTACGCCTTTG 1570
Query 1554 GCAACATTCCGTTAATGCCACCTGGACTTCCGCCGccaccaccaccaccaccacATTTGA 1613
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1571 GCAACATTCCGTTAATGCCACCTGGGCTTCCGCC---ACCACCACCACCACCACATTTGA 1627
Query 1614 TAGGTAATCAACAGCCTCAAATTCCCCAGTCAAACTCAGCTCAGCAATCTCAACAAGGTC 1673
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1628 TAGGTAATCAACAGCCTCAAATTCCTCAGTCGAACTCAGCTCAGCAATCTCAACAAGGTC 1687
Query 1674 CAACTTTCCAGCCACCGGGGTTAATGTATTACGGAGCTCCACACCATTCTTAAAATTAGA 1733
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1688 CAACTTTCCAGCCACCAGGGATAATGTATTACGGAGCTCCACACCATTCTTAAAAT-AGA 1746
Query 1734 AATGATGTTAGTTAATAGCATTTAGATAGTTCTGACCCTTTTTCTTATCTGATCGAATGT 1793
||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1747 AATGATGTTAGTTAATAGC-TTTAGATAGTTCTGACCCTTTTT---ATCTGCTCGAATGC 1802
Query 1794 GGTTTCGATGTTATATTGTTGGGTCAAATCAAAGTAGAACTACTGTTCCTCTGGTTGTAG 1853
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GGTTTCGATGTTACATTGTTGGGTCAAATCAAAGTAGAACTACTGTTCCTCTGGTTGTAG 1862
Query 1854 AATCCTCACCTTTTTCCCGTTACTGATAATTGTACCACAAGGTTT-TACAACATAATGTA 1912
|||||||||||||| |||||||| |||| |||||||||||| ||| ||||||||||||||
Sbjct 1863 AATCCTCACCTTTT-CCCGTTACAGATATTTGTACCACAAG-TTTCTACAACATAATGTA 1920
Query 1913 ATAATTTTCTCCTGTTTACTCTCTATCTCCTTCATGCATGTATGTAGACTTCTATACCTT 1972
||||||| |||||||| |||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1921 ATAATTT-CTCCTGTTCACTCTCTATCTCCTTCCTGTATGTATGTATACTTCTATACCTT 1979
> AT5G65180.1 | Symbols: | ENTH/VHS family protein | chr5:26045361-26048031
FORWARD LENGTH=1809
Length=1809
Score = 811 bits (439), Expect = 0.0
Identities = 745/890 (84%), Gaps = 32/890 (4%)
Strand=Plus/Plus
Query 310 TGGGATGAGTAGTGTGTTCAGTGAACAGATCCTGATTGATAAGCTCGCTAAGCTCAATAG 369
||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||| ||
Sbjct 261 TGGGATGAGTAGTCCGTTCAGTGAAGAGATACTGATTGATAACCTCGCTAAGCTCAACAG 320
Query 370 CACTCAACAGTGCATCGAAACTCTGTCACATTGGTGTATATTCAATCGGACCAAAGCTGA 429
||||||||| | |||| ||||| ||||||| ||||||||| || |||| | |||||||
Sbjct 321 CACTCAACAATCCATCCAAACTTTGTCACAGTGGTGTATAGTCCATCGTAGTGAAGCTGA 380
Query 430 ATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT-GGCTCAGAAAGTCC 488
|| | ||||||||||||||||||||||||||||||||| |||| || ||||||||| |
Sbjct 381 GCTGGTTGTTACGACATGGGAGAAACAGTTTCACAGTACACAGATAGG-TCAGAAAGTGC 439
Query 489 CTCT-TATGTA-TTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCAGGGTAATGAGTT 546
|||| | |||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 440 CTCTCT-TGTACCTT-GCTAATGACATTCTTCAGAACAGCAAGCGTCAGGGTAATGAGTT 497
Query 547 CGTGCAAGAGTTCTGGAATGTTCTTCCTAAG-GCTGTTAAAGACATTGTTT-CTCAAGGA 604
||||||||||||||||| ||||| ||| | ||| | ||||| ||||||| || |||
Sbjct 498 TGTGCAAGAGTTCTGGAAAGTTCTCCCT-GGTGCTCTCAAAGATATTGTTTCCT-TGGGA 555
Query 605 GATGATTATGGCAAAA-GCGTTGTCTCACGTTTGGTCAAGATATGGGAAGAAAGAAGAGT 663
||||| ||||| |||| |||| || || || ||||| || ||||||||||| ||||||||
Sbjct 556 GATGACTATGG-AAAAGGCGTGGTTTCGCGATTGGTTAATATATGGGAAGAGAGAAGAGT 614
Query 664 GTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCT-TGGAGAAGATGTTCC-CCTG 721
|||||||||||||||||||||||||||||||||||||| | |||||| | ||| ||
Sbjct 615 CTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCTCTC-AGAAGAAGCTCCACCA- 672
Query 722 CCACTTGATATCAGCAAAAAGCGGTCTCGCGGATCCAGATCTGGAAAACGGGATTCAAAA 781
||||||||| |||| |||||||| | ||| ||||| | ||||| |||||| |||||||||
Sbjct 673 CCACTTGATGTCAGTAAAAAGCGATTTCGGGGATCTAAATCTGCAAAACGAGATTCAAAA 732
Query 782 TCGT-CCAGAGCGAAATTATCATCAAGTGGAGGTGTGGCTGAGAAGATAGCATCAGCATA 840
|| | ||| | ||||||||||| | ||||||||||| | |||||||||| ||| ||||
Sbjct 733 TC-TACCAAAACGAAATTATCA--A-GTGGAGGTGTGTCCGAGAAGATAGTATCTGCAT- 787
Query 841 TCA-TTTGGTT-GTTGCCGAAAACTCAAATGAAGA-AGCTGAGATGAATAAATGTAAGTC 897
||| ||||||| || || || |||||||||||||| | | |||||||| ||||| |||||
Sbjct 788 TCAATTTGGTTCGT-GCAGAGAACTCAAATGAAGAGA-CAGAGATGAACAAATGCAAGTC 845
Query 898 CGCAGTTAAACGAATCAGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGCTAA 957
|| |||| ||| ||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 846 TGCCGTTAGACGTATCAGAAAGATGGAGAAAGATGTTGAAGATGCTTGCTCCACTGCAAA 905
Query 958 AGACAACCCGAAGAGAA-AATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTTGA 1016
|||| || || || || |||| ||||| |||||||||||||| |||||| || || |||
Sbjct 906 AGAC--CC-GAGGA-AAGAATCATTGGCAAAAGAATTGGAAGAGGAAGAAAACATTCTGA 961
Query 1017 GACAATGTATTGAGAAACTTAAATCTGTCCAAGGAAGTAGAACTTCCCTTGTGAACCAGC 1076
|||||| | ||||||||||||||||||| ||| |||||| || || || || || || |
Sbjct 962 GACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTCGTAAATCATC 1021
Query 1077 TTAAAGATGCATTACGCGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCAGG 1136
||| || || |||| ||||||||||| ||| |||| |||||| || ||||||| ||||
Sbjct 1022 TTAGGGAAGCGCTACGGGAACAGGAATCTGAATTGGAGAATCTTCAATCTCAGATACAGG 1081
Query 1137 TCGCACTAGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAAT 1186
| |||| ||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1082 TAGCACAAGAACAAACCGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5