BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487833
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10070.2 | Symbols: | RNase L inhibitor protein-related | c... 1428 0.0
> AT5G10070.2 | Symbols: | RNase L inhibitor protein-related |
chr5:3148523-3150433 REVERSE LENGTH=1071
Length=1071
Score = 1428 bits (773), Expect = 0.0
Identities = 912/975 (94%), Gaps = 25/975 (3%)
Strand=Plus/Plus
Query 1 AACATCGGTCCGTCGGTTACCTTTAGAAACCCTAATTTACATATAAAACCCTGAGCCGAT 60
||||||| |||||||| |||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 10 AACATCGTTCCGTCGGCTACCATTAGAAAACCTAATTTACATATAAAACCCTAAGCCGAT 69
Query 61 C-AAAAAGCCTTTCCATTTGTC-GGAAATATCGCCGGAAAAAATGGGTTACGGGAAGCAC 118
| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 70 CAAAAAAACCTTTGCATTTGTCGGGAAA-ATCGCCGG-AAAAATGGGTTACGGGAAGCAT 127
Query 119 AATCGATCTAGAGGAGGCAATTCGAATCGTGGTCAAACTAGTCGGACTGATAATCTTGGA 178
|||||||||| |||||| ||||| || ||| | |||||||||||||||||| |
Sbjct 128 AATCGATCTAAAGGAGGTAATTC-AA-----GTC---GTGGTCGGACTGATAATCTTGCA 178
Query 179 AGGGAAGATGAATCGCTTCCTCTTGATCAAGAGCCTGAGGGA-GAAGCACCAGTTCCAAA 237
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 179 AGGGAAGATGAATCGCTTCCTCTTGATCAAGAACCTGA-GGATGAAGCACCAGTTCCAAA 237
Query 238 AGTTCAATTGGCAATGTGGGATTTTGGTCAATGTGATGCAAAGAGGTGCACAGGTCGTAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGTTCAATTGGCAATGTGGGATTTTGGTCAATGTGATGCAAAGAGGTGCACAGGTCGTAA 297
Query 298 GCTTGCTAGATTTAACTTGTTAAAAGAATTGCGGGTTAACACTGGCTTTGGAGGAGTTGT 357
|||||||||||||||||||||||||||||| |||||||||||||| || || || |||||
Sbjct 298 GCTTGCTAGATTTAACTTGTTAAAAGAATTACGGGTTAACACTGGATTCGGGGGTGTTGT 357
Query 358 TTTAAGTCCAGTTGGTAGACAATGTGTTTCAAGGGAAGACTATGATCTGATTAAAAGGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTAAGTCCAGTTGGTAGACAATGTGTTTCAAGGGAAGACTATGATCTGATTAAAAGGAA 417
Query 418 AGGATTAGCCGTTGTTGATTGTTCTTGGGCACGTCTAACTGATGTCCCGTTTGCAAAGCT 477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGGATTAGCTGTTGTTGATTGTTCTTGGGCACGTCTAACTGATGTCCCGTTTGCAAAGCT 477
Query 478 GCGTTGTACTGCTCCTCGTCTTTTACCATGGTTAGTAGCAGCAAATCCAGTAAATTATGG 537
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 GCGTTGTACTGCACCTCGTCTTTTACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGG 537
Query 538 AAGACCATGTGAGCTATCTTGTGTGGAGGCTTTATCTGCCGCCTTAATACTATGTGGGGA 597
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 AAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGTGGGGA 597
Query 598 GAAGGAAACTGCAGAGCTTTTGCTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCTCT 657
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 598 GAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCATGCCTTTTTATCT-T 656
Query 658 T-AACAAGGATATTCTAAAAGAGTACTCGAAATGTGAGAATAGTGCTGAGATCATCTCAG 716
| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 657 TGAACAAGGATATTCTAAAGGAGTACTCAAAATGTGAGAATAGCGCTGAGATCATCTCAG 716
Query 717 TTCAAAATTCTTGGCTTACTCAGCAAACTCAGATCCCAAAACAACCACCTGCGCTCGAAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCAAAATTCTTGGCTTACTCAGCAAACTCAGATCCCAAAACAACCACCTGCGCTCGAAG 776
Query 777 AACGTAAAGATGTTAAGAAAGATGGTGAATCTGGTGATGATGAATCAGAGGATGATGAGG 836
|||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
Sbjct 777 AACGTAAAGATGTTAAGAAAGATGGTGAATCTGGTGATGA--A-TCAGAGGAGGATGATG 833
Query 837 AAGATGGTCTCCCTCCTCTAGAGAGGAACATGAACCATATCAAATTGGAAGACAGTGAGG 896
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 AAGATGGCCTCCCTCCTCTAGAGAGGAACATGAACCATATCAAATTAGAAGACAGTGAGG 893
Query 897 AAGAAGACAGCGAGTGAAA-GCCATTGGAGAAATTCTATTTGATCTaaaaaaaaaaGTTT 955
| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 894 AGGAAGATAGCGAGTGAAAAGCCATTGGAGAAATCCTATTTGATCTAAAAAA----GTTT 949
Query 956 CTATCTTTGGCTTAC 970
| |||||||||||||
Sbjct 950 CCATCTTTGGCTTAC 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5