BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487834
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10080.1 | Symbols: | Eukaryotic aspartyl protease family p... 2440 0.0
> AT5G10080.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:3150843-3153380 FORWARD LENGTH=1587
Length=1587
Score = 2440 bits (1321), Expect = 0.0
Identities = 1512/1601 (94%), Gaps = 25/1601 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCACGATCTGCTTTTATACTCTTCTGTGTTCTATTTCTAGCTACAGAGGGGACT 60
|||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 ATGGTGTCACGATCTGCTTTTTTACTCTTCTGTGTGCTATTTCTAGCTACAGAGGAGACT 60
Query 61 CTAGCTT-CTGTCTTTTCCTCAAGGCTGATCCATCGCTTCTCCGACGAAGGAAGAGCGTC 119
||||||| || | || || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CTAGCTTCCT-TATTCTCATCAAGGCTGATTCATCGCTTCTCCGACGAAGGAAGAGCGTC 119
Query 120 GATTAAGACTCCGAGTTCGTCGGGA-TCGTTGCCGGAGAAACAGAGCTTGGCGTATTATC 178
||||||||||||||||||||| ||| ||||||||| | ||||||||||| | ||||||||
Sbjct 120 GATTAAGACTCCGAGTTCGTC-GGATTCGTTGCCGAATAAACAGAGCTTAGAGTATTATC 178
Query 179 GATTGCTAGCTAAAAGTGATTTCCGAAGACAGAGAATGAATCTTGGTGCTAAGTTTCAGT 238
| || || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 GGTTACTGGCTGAAAGTGATTTCCGAAGACAGAGAATGAATCTTGGTGCTAAGGTTCAGT 238
Query 239 CTCTTGTTCCATCTGAAGGAAGCAAAACTATATCTTCTGGAAATGACTTTGGATGGCTAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTCTTGTTCCATCTGAAGGAAGCAAAACTATATCTTCTGGAAATGACTTTGGATGGCTAC 298
Query 299 ACTACACATGGATCGACATAGGGACTCCGAGTGTATCGTTTCTTGTGGCTTTAGATACTG 358
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 ACTATACATGGATCGACATAGGGACTCCAAGTGTATCGTTTCTTGTGGCTTTAGATACTG 358
Query 359 GAAGTGATCTACTTTGGATTCCTTGCAACTGTGTGCAATGTGCTCCTTTAACATCCACTT 418
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 GAAGTAATCTACTTTGGATTCCTTGTAACTGTGTGCAATGTGCTCCTTTAACATCCACTT 418
Query 419 ATTATAGCAGCCTGGCTACTAAAGATCTGAACGAGTATAATCCATCAAGTTCAAGCAGCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 ATTATAGCAGCCTGGCTACTAAAGATCTGAACGAGTATAATCCATCAAGTTCAAGCACCA 478
Query 479 GCAAAGTCTTTCTGTGCAGCCATAAGCTGTGCGGTTCTGCTTCAGATTGTGATAGCCCGA 538
||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
Sbjct 479 GCAAAGTCTTTCTGTGCAGCCATAAGCTGTGTGATTCTGCTTCAGATTGTGAGAGCCCAA 538
Query 539 AGGAGCAATGCCCTTATACTGTTAAATACCTTAGTGGAAATACCTCTAGCTCGGGACTAC 598
||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| |||
Sbjct 539 AGGAGCAATGCCCTTATACTGTTAACTACCTTAGTGGAAACACCTCGAGCTCAGGATTAC 598
Query 599 TTGTTGAAGACATCTTGCATCTTACATATAATACTAACAATAGACTCATGAATGGTTCCT 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 TTGTTGAAGACATCTTGCATCTTACATATAATACTAACAATAGACTGATGAATGGTTCCT 658
Query 659 CCTCTGTCAAGGCTCGAGTTGTTGTAGGATGTGGTAAGAAGCAAAGTGGGGACTACTTGG 718
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 CCTCTGTTAAGGCTCGAGTTGTTATAGGATGTGGTAAGAAGCAAAGTGGGGACTACTTGG 718
Query 719 ATGGGGTTGCTCCTGATGGTTTGATGGGTTTAGGACCTGCAGAAATCTCGGTTCCAAGTT 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATGGGGTTGCCCCTGATGGTTTGATGGGTTTAGGACCTGCAGAAATCTCGGTTCCAAGTT 778
Query 779 TTCTCTCTAAAGCAGGACTCATGAGAAACTCTTTCTCGTTGTGCTTTGATGAGGAAGATT 838
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 TTCTCTCTAAAGCGGGACTCATGAGAAACTCGTTCTCGTTGTGCTTTGATGAGGAAGATT 838
Query 839 CAGGGAGAATTTACTTCGGTGACATGGGACCGTCAATACAACAATCAGCACCATTCCTTC 898
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 839 CAGGGAGAATTTACTTCGGTGACATGGGACCGTCAATACAACAATCAACCCCATTCCTCC 898
Query 899 AGCTTG---AGAAC--A-ATTCAGGCTACATTGTGGGTGTGGAGGCTTCTTGTATTGGCA 952
|||||| | ||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 AGCTTGACAACAACAAATATTCAGGCTACATTGTGGGTGTGGAGGCTTGTTGTATTGGCA 958
Query 953 ACTCGTGTCTGAAGCAGACGAGCTTCACAACTTTTATTGATAGTGGACAATCATTTACTT 1012
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ACTCGTGTCTGAAGCAGACGAGCTTCACAACTTTTATTGACAGTGGACAATCATTTACTT 1018
Query 1013 ATCTACCGGAAGAAATATACAGAAAAGTTGCACTTGAGATTGACAGACATATAAATGCTA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 ATCTACCGGAAGAAATATACAGAAAAGTTGCACTTGAGATTGACAGACATATAAACGCTA 1078
Query 1073 CGAGTAAGAGCTTTGAAGGTGTTTCGTGGGAGTATTGCTATGAATCTAGTGTTGAGCCAA 1132
||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1079 CGAGTAAGAACTTCGAAGGTGTTTCATGGGAGTATTGCTATGAATCTAGTGCTGAGCCAA 1138
Query 1133 GGGTACCAGCGATCAAACTCAAGTTTTCGCACAATAACACATTCGTGATTCACAAACCTT 1192
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 AGGTGCCAGCGATCAAACTCAAGTTTTCACACAATAACACATTCGTGATTCACAAACCTT 1198
Query 1193 TGTTTGTATTCCAACAAAGTCAGGGGCTTGTTCAATTTTGCTTGCCTATCAGTCCTAGTG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTTTGTATTCCAACAAAGTCAGGGGCTTGTTCAATTTTGCTTGCCTATCAGTCCTAGTG 1258
Query 1253 GACAAGAAGGCATAGGAAGCATAGGACAGAACTACATGAAAGGGTATCGAATGGTTTTCG 1312
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 GACAAGAAGGAATAGGAAGCATAGGACAGAACTACATGAGAGGGTATCGAATGGTTTTCG 1318
Query 1313 ATAGAGAGAAAATGAAGCTAGGCTGGTCACCCTCTAAATGTCAAGAAGATAAAATAGAGC 1372
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 ATAGAGAGAACATGAAGCTAGGCTGGTCACCCTCTAAATGTCAAGAAGATAAGATAGAGC 1378
Query 1373 CGCCTCAAGCTTCACCGGGAAGCACTTCATCGCCATATCCATTACCAACAGAGGAGCAAC 1432
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1379 CGCCTCAAGCTTCACCGGGAAGCACTTCATCGCCAAATCCATTACCAACAGACGAGCAAC 1438
Query 1433 AAAGCAGAGG---CCATGCGGTTTCACCAGCAATTGCAGGTAAAACTCCATCCAAAACAC 1489
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AAAGCAGAGGAGGCCATGCAGTTTCACCAGCAATTGCAGGTAAAACTCCATCCAAAACAC 1498
Query 1490 catcatcatcatcctcatcaaaatcatcatgcatcTTCTCTTCCATGATGAGATTATTCA 1549
||||||||||||| |||| | | || || | | ||||||||| |||||||||||||
Sbjct 1499 CATCATCATCATC---ATCA---T-A-CA-GC-T-T-CTCTTCCATAATGAGATTATTCA 1546
Query 1550 ACTCTCTTCTTCTGCTACATTGGGTTGTTTCTTTAATGTAG 1590
|||| |||||||| ||||||||| ||| ||||||||||||
Sbjct 1547 ACTCACTTCTTCTACTACATTGGCTTGCCTCTTTAATGTAG 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5