BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487837
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10110.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1716 0.0
> AT5G10110.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G65120.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:3166439-3168297 REVERSE LENGTH=1343
Length=1343
Score = 1716 bits (929), Expect = 0.0
Identities = 1171/1283 (91%), Gaps = 35/1283 (3%)
Strand=Plus/Plus
Query 2 TGATTTCGAAAAACGCGAGT-CAAAAGAAGAGAATCGAGATCGGAAACTCTGCACGGTTC 60
|||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||
Sbjct 9 TGATTTCGAAAAACGCGAGTCCAAAAAAAGAAAATCGAGATCGGAAACTCCGCACGGTTC 68
Query 61 CCGCCTCAACCAAATCAAAAACCCTAATTTTCTCACCAATCAGATCCTCCACAATTATCC 120
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 69 CCGCCTCAACCAAATCAAAAACCCTAATTTCCCCACCAATCAGATCCTCCACAATTATCC 128
Query 121 CACCGACGAACCCTGTCAATCTCTCTAGATGACTGAAGATAGCAGCAAAACAATGTCGGA 180
|||||||||| ||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 129 CACCGACGAATCCTATCAATCTCTCTAGATGACTGAAGATAGCAGCAAATCAGTGTCGGA 188
Query 181 GA-AAACCCGACCTGTTTTGGGTGATTTGACGAATCTTCC-AAGCAAAAGAGGGATTTCA 238
| |||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct 189 -ACAAACCCGACCCGTTTTGAGTGATTTGACGAATCTTCCAAAG-AAAAGAGGGATTTCA 246
Query 239 TCGATTTTGGGTGATTTGCTTGATGAATCTGGTAAGACCATTGCTCATGAAGTTTCAAGA 298
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 247 TCGATTTTGGGTGATTTGCTTGATGAATCTGGTAAGACCGTTGCTCATGAAGTTTCAAAA 306
Query 299 GAGAAGTTTTCGAAGAGGTTGTGTTTAGTTGTAGATGATTTGGTTAAGGAAAATGCTAGA 358
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 307 GAGAAGTTTTCAAAGAGGTTGTGTTTAGTCGTAGATGATTTGGTTAAGGAAAATGCTACA 366
Query 359 CCTTTGGATACAATTGAAAGGTCTTCTTCGTTTGATCAA-AATACTTCTGGTGATTCTGT 417
||||||||||||||| || |||||| |||||||||| || ||||||||||||||| ||||
Sbjct 367 CCTTTGGATACAATTCAAGGGTCTTGTTCGTTTGAT-AAGAATACTTCTGGTGATGCTGT 425
Query 418 TGACAAAGAAGAATCTGAGGAATATCATGATGCTGTGATGGAATTCTCCAGTGGTGATGG 477
|||| | ||||| || | |||||||||||||| ||||||||||||||||| ||| |
Sbjct 426 TGAC--A-AAGAA---GA-G--TATCATGATGCTGTAATGGAATTCTCCAGTGGAGATTG 476
Query 478 CAAAGCTTTGAAGGAAAGCAAGTCTGTACAGATCTATTTTGAGCCTGGTGATAGAGACGG 537
|||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 477 CAAAGCATTGAAGGAAAGCAAGTCTATACAGATCTATTTTGAACCTGGTGATAGAGACGG 536
Query 538 TGCACGAGAGTTAAGCGCGGCTGCTAATGCGAATCAAACCGATGTCCCTGGT---GAAGG 594
|||||||||||||| ||| |||||||||||| ||||||||||||| ||||| |||||
Sbjct 537 TGCACGAGAGTTAAACGCAGCTGCTAATGCGGATCAAACCGATGTTACTGGTGGAGAAGG 596
Query 595 CTTGGCTTTATCTCTGTTACCTAGCAATACCGAGAGCAGGAATCTACTGAAGACTGGGAA 654
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 597 CTTGGCTTTATCTTTGTTAACTAGCGATACCGAGAGCCGGAATCTACTGAAGACTGGGAA 656
Query 655 GGAGTTGTCTGATTGTCAGAATTTGAGATCATTTGAAATGAGTAGATGCTCGAATGTTAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 GGAGTTGTCTGATTGTCAGAATTTGAGATCATTTGAAATGAGTAGATGCTCCAATGTTAA 716
Query 715 CAGTAAGGAGCATGTGAATCTGAACACAGGAGATGACTTGCTAAAATCTTGCTGTTGTTC 774
| ||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||
Sbjct 717 GAATAAGGAGCATGTGAATCTGAATACAGGAGATGACTTGCTTAGATCATGCTGTTGTTC 776
Query 775 ATTCTGTCTC-CACGCTTCGTATATGTGGTCAGATCTTAATTACCAGGATACCAAAGGTC 833
|||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 777 ATTCTGTCTCACA-GCTTCGTATATTTGGTCAGATCTTAATTACCAGGATAGCAAAGGAC 835
Query 834 GATTATCCGCTATGAAGAAGAGTCAGAAAGCAGCTAGCAACTTGATTCAAAGGAATGCTA 893
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 836 GATTATCCGCCATGAAGAAGAGTCAGAAAGCAGCTAGCAACTTGATTCAAGGGAATGTTA 895
Query 894 AGGAAAGACCTACGGATTTTCATGTCACGGAAAACTCCGTTAGTTCTGCAAAACAAGAAT 953
| |||||| |||| |||||||||| ||||| |||||| ||| | |||||||||||||||
Sbjct 896 AAGAAAGATCTACAGATTTTCATGCCACGGGAAACTCAGTT--T-CTGCAAAACAAGAAT 952
Query 954 CCAAGCTCATGGCCCAGTGGAGGTCGCTCTTTCTTAGCATGGGCGATATCCTG-GCTCAA 1012
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 953 CCAAGCTCATGGCCCAGTGGAGGTCGCTCTTTCTTAGCATGGGCGATATCCTCAG-TGAA 1011
Query 1013 GAGAGTAGCCACCTTCAAAATAGCTTTGTGAGGATGAAAAAATTGCGAGAAGATTGCAGG 1072
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| |
Sbjct 1012 GAGAGTAGCCACCTTCAAAACAGCTTTGTGAGAATGAAAAAATTGCGAGACGATTGCAAG 1071
Query 1073 ATGGATGTAGAGAGAGCAATGAAATCACCT-AA-A-CACAACACCCAGTAACTACT-TGA 1128
|||||| ||||||||||||||||| |||| || | ||||||||||||||| |||| | |
Sbjct 1072 ATGGATTTAGAGAGAGCAATGAAAAAACCTCAACAACACAACACCCAGTAAGTACTCTTA 1131
Query 1129 TCAAACATTGTAATGAATCGAACTTCTCTTTCTGAAAATT---ACAA-TATCTGGATGCA 1184
|| | | ||| ||||||| |||||||||||||| ||||| | || ||||||||||||
Sbjct 1132 -CACATACTGTTATGAATCCAACTTCTCTTTCTGGAAATTTTTATAAGTATCTGGATGCA 1190
Query 1185 ATGTATAGATGCTTAAAATCGTAAATGGGTATGTATGAGTGCAACTATTGTTGGTGTTGT 1244
||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||
Sbjct 1191 ATGTATAGATGCTTAAAATCGTAAATGATTATGGATGTGTGCAACTATTGTTGGGGTTGT 1250
Query 1245 TAAGTTCTTCTATCAAACTCCTT 1267
|||||||||||||||||||||||
Sbjct 1251 TAAGTTCTTCTATCAAACTCCTT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5