BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487838
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10120.1 | Symbols: | Ethylene insensitive 3 family protein... 2106 0.0
AT5G65100.1 | Symbols: | Ethylene insensitive 3 family protein... 586 2e-166
> AT5G10120.1 | Symbols: | Ethylene insensitive 3 family protein
| chr5:3169732-3171147 FORWARD LENGTH=1416
Length=1416
Score = 2106 bits (1140), Expect = 0.0
Identities = 1329/1418 (94%), Gaps = 22/1418 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGAAGTAGAAGAATTGGAACCACTTAGTCCGATTGAAGATGAGGAAGAAGAAATC 60
||||||||||| ||||||||||||||||||||||| || || ||||| |||||||| ||
Sbjct 1 ATGGTGGAAGTCGAAGAATTGGAACCACTTAGTCCAATGGACGATGAAGAAGAAGAGATA 60
Query 61 AGCTATGATGACCTCAAAAGACGCATGTGGAAAGACCGAAACCTCATGG---AAAAGCTC 117
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGCTATGATGACCTCAAAAGACGCATGTGGAAAGACCGAAACCTCATGGAAAAAAAGCTC 120
Query 118 AAGCAACAGAAACGACACAGCAAGGACGTCGTTTCGTTTACAACACACCGAGCCGAAGCG 177
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCAACAGAAACGACACAGCAACGACGTCGTTTCGTTTACAACACACCGAGCCGAAGCT 180
Query 178 TCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCGGTGTTGAAGTACATGATGAAGATC 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCAGTGTTGAAGTACATGATGAAGATC 240
Query 238 ATGGAGGTGTGTAAAGCGAAAGGGTTTGTCTACGGAATTGTACCGGAAAAGGGTAAACCA 297
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 ATGGAGGTGTGTAAAGCTAAAGGTTTTGTATACGGAATTGTACCGGAAAAGGGTAAACCA 300
Query 298 ATAACGGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGTTCAGTTCGACCAA 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAACCGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGTTCAGTTCGACCAA 360
Query 358 AACGCTCCAGACGCTATCACTGATTACTTAACACTCGCGGCTGCGGCTGCTGCAGCAGAG 417
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 361 AACGCTCCAGACGCTATCACAGATTACTTAGCACTCGCGGCTGCTGCTGCTGCAGCAGAG 420
Query 418 CTAATCGATAAGTCTTCATCATCATCGAGCTTACTACACATGTTACAAGAGCTACAAGAC 477
|||||||||||||| |||||||| ||||||||| ||||||||||||| || || ||||||
Sbjct 421 CTAATCGATAAGTCCTCATCATCCTCGAGCTTATTACACATGTTACAGGAACTGCAAGAC 480
Query 478 ACGACTCTAGGGTCGTTACTATCAGCGTTAATGCAACATTGCATGCCGCCACAGCGGCGG 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGACACTAGGGTCGTTACTATCAGCGTTAATGCAACATTGCATGCCGCCACAGCGGCGG 540
Query 538 TTTCCGTTAGAGAAAGGAATCGCTCCGCCATGGTGGCCGACGGGTACGGAGCTTTGGTGG 597
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 541 TTTCCGTTAGAGAAAGGAATTGCTCCGCCATGGTGGCCGACGGGGACGGAGCTTTGGTGG 600
Query 598 GGAGAGCAAGGAGCGGCACATGAGCACGGTGCGCCGCCATA-CAGAAAGCCGCACGATTT 656
||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 601 GGAGAACAAGGAGCGGCACATGAGCACGGTGCACCGCCATATC-GAAAGCCGCACGATTT 659
Query 657 GAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTGTGATTAAACACATGTCGCCGAATTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTGTGATTAAACACATGTCGCCGAATTT 719
Query 717 GGGAAGAGTGAGACGTCTCGCGAGACAATCTAAAAGTTTGCAAGATAAGATGATGGCTAA 776
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GGGAAGAGTGAGACGTCTGGCGAGACAATCTAAAAGTTTGCAAGATAAAATGATGGCTAA 779
Query 777 AGAGACCGATACTTGGTCTCGAGTCTTAAACCAAGAAGAAGCTCTTCTCAATATCAAAGA 836
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGAGACTGATACTTGGTCTCGTGTCTTAAACCAAGAAGAAGCTCTTCTCAATATCAAAGA 839
Query 837 CCTCAAGATCTCGGAAGACCA--A-GATCAAGAATCGTCGGGGTCTAAGAGAAAGGGTGA 893
|||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||
Sbjct 840 CCTCAAGATCTCGGAAGATCAGGACGATCAAGAATCGTCGGGGTCTAAGAGAAAAAGTGA 899
Query 894 ATTTATGGAACCGTCAAAGAGTGTTTACACTTGCCAAAACTCGAGTTGTCCTAAAAGTGA 953
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCTATGGAACCGTCTAAGAGTGTTTACACTTGCCAAAACTCGAGTTGTCCTAAAAGTGA 959
Query 954 CGTGAGTTTTGGATTCGGGGACAAGAACTCAAGGACAGGTCATGAGATCCAGTGTCTATA 1013
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 960 TGTGAGTTTTGGATTCGGGGACAAGAACTCGAGGACGGGTCATGAGATCCAGTGTCTTTA 1019
Query 1014 CGGGTCGACCCAAGAGCCGAGCCAGAGCGGTGAATATACACCTTCCATGCTTGAAATGGT 1073
||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 1020 TGGGTCGAACCAAGAACCGAGCCAGAGCGGTGAATATACATCTTCCTTGCTTGAAACGGT 1079
Query 1074 TCCAAGTATTGTTACTAGTTCGACTAGTGATGATGATTATTACAGTGTGAGCTCGAGTGC 1133
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||||
Sbjct 1080 TCCAAGTATTGTTACTAATTCGACTAGTGAAGATGATTATTACAATGTGAGCTCGCGTGC 1139
Query 1134 AATGGACAAGCGAGATGGTGATGATCATAGCATTAATGGGAATTGGATGGAATATTTTTG 1193
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 ACTGGACAAGCGAGATGATGATGATCATAGCATTAATGGGAATTGGATGGAATATTTCTG 1199
Query 1194 GTTGGAAAAGATGCAGCAGGAGTTACATTGCTCTAGGACATTCGAAGATGATGAGGGTAC 1253
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1200 GTTAGAAAAGATGCAGCAGGAGTTTCATTGCTCTAGGAGATTCGAAGATGATGAGGGTAC 1259
Query 1254 TGGAACGGA-TATGAACCAGTTCACAGAATCTGATCGATCGGACAACGTGAA------CC 1306
||||||||| | ||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1260 TGGAACGGACTTTGA-CCAACTCACAGAATCTGATCGATCGGACAACGTGAATTTGAACC 1318
Query 1307 AG---A-AA--TCTGATCGATCGGACAACGTGAACCAGAGTAATTTTTCAGTTTGGGACA 1360
| | || ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1319 AACTTACAAAATCTGATCGATCGGACAACGTGAACCGGAGTGCTTTTTCAGTTTGGGACA 1378
Query 1361 TGGGTTGCGAAGACAAGGACATATACATGTTCGATTAA 1398
|||||||||| ||||| |||||||||||||||||||||
Sbjct 1379 TGGGTTGCGAGGACAAAGACATATACATGTTCGATTAA 1416
> AT5G65100.1 | Symbols: | Ethylene insensitive 3 family protein
| chr5:26006835-26008508 REVERSE LENGTH=1674
Length=1674
Score = 586 bits (317), Expect = 2e-166
Identities = 593/721 (82%), Gaps = 40/721 (6%)
Strand=Plus/Plus
Query 165 CCGAGCCGAAGCGTCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCGGTGTTGAAGTA 224
|||| | ||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 258 CCGAACTGAAGCTTCACGGCGCAAGAAAATGGCTCGATCTCAAGATTCGGTGTTGAAGTA 317
Query 225 CATGATGAAGATCATGGAGGTGTGTAAAGCGAAAGGGTTTGTCTACGGAATTGTACCGGA 284
|||||||||||| ||||| || || ||||| |||| || || |||||||| ||||||||
Sbjct 318 CATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTTTACGGAATCGTACCGGA 377
Query 285 AAAGGGTAAACCAATAACGGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGT 344
||| |||||||| |||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 378 AAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGTTGGTGGAAAGAAAACGT 437
Query 345 TCAGTTCGACCAAAACGCTCCAGACGCTATCACTGATTACTTAACACTCGCGGCTGCGGC 404
||| |||||||||| ||||||| ||||| | |||||||||| ||| | |||||||| |
Sbjct 438 TCAATTCGACCAAACCGCTCCAAACGCTGTTTCTGATTACTTGACATTAGCGGCTGC-TC 496
Query 405 TGCTGCAGCAGAGCTAATCGATAAGTCTTCATCATCATCG-A-GC-T-TACTACACATG- 459
| | | | | | || || || |||| | ||| || | | | || | ||||||
Sbjct 497 AG-TTAATCTCATC-AAACG--AA-TCTTTA-GATC--CGAATTCGTATA-TCCACATGC 547
Query 460 TTACAAGAGCTACAAGACACGAC-TCTAGGGTCGTTACTATCAGCGTTAATGCAACATTG 518
|| || ||||||||||||||||| | ||||||| || ||||||| || |||||||||||
Sbjct 548 TT-CACGAGCTACAAGACACGACGT-TAGGGTCATTGTTATCAGCTTTGATGCAACATTG 605
Query 519 CATGCCGCCACAGCGGCGGTTTCCGTTAGAGAAAGGAATCGCTCCGCCATGGTGGCCG-A 577
| |||||||||| || ||||||||||| || ||||| | |||||||| ||||||||| |
Sbjct 606 CGTGCCGCCACAACGACGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGGCCGAA 665
Query 578 CGGGTACGGAGCTT-TGGTGGGGAGAGCAAGGA---GCGGCACATGAGCACGGTGCGCCG 633
|||| || ||| || |||||||||||||||||| ||||| ||| |||||| | ||
Sbjct 666 CGGG-ACAGAG-TTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAACACGGTCCACCT 723
Query 634 CCATA-CAG-AAAGCCGCACGATTTGAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTG 691
||||| | | ||| ||||||||| | |||||| |||||||||| || ||| | |||||||
Sbjct 724 CCATATC-GCAAA-CCGCACGATCTAAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCTG 781
Query 692 TGATTAAACACATGTCGCCGAATTTGG-GAAGAGTGAGACGTCTCGCGAGACAATCTAAA 750
||||||||||||||||||||||||||| || |||||||||| ||||||||||| || |||
Sbjct 782 TGATTAAACACATGTCGCCGAATTTGGAGA-GAGTGAGACGGCTCGCGAGACAGTC-AAA 839
Query 751 A-GTTTGCAAGATAAGATGATGGCTAAAGAGACCGATACTTGGTCTCGAGTCTTAAACCA 809
|||||||||||||||||||||| |||||||| |||||||||||||| || || |||||
Sbjct 840 GTGTTTGCAAGATAAGATGATGGCGAAAGAGACTGATACTTGGTCTCGTGTGTTGAACCA 899
Query 810 AGAAGAAGCTCTTCTCAATATCAAAGACCTCAAGATCTCGGAAGACCAAGATCAAGAATC 869
||||||||||| ||||||| | | |||||||||||| || ||| |||| | || |||
Sbjct 900 AGAAGAAGCTCGTCTCAAT--C---G-CCTCAAGATCTCAGATGACGAAGA-CGAGGATC 952
Query 870 G 870
|
Sbjct 953 G 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5