BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487839
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10130.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1136 0.0
> AT5G10130.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:3171299-3172528 REVERSE LENGTH=847
Length=847
Score = 1136 bits (615), Expect = 0.0
Identities = 717/766 (94%), Gaps = 7/766 (1%)
Strand=Plus/Plus
Query 1 AGTTTTCACATAAAACAGAAAACCCCTTCACTAATAACAATCTCCAAATGGCTAAATCAT 60
||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 54 AGTTTTCACATAATACACAAAACCCTTTCACTAATAACAATCTCCAAATGGCTAAATCAT 113
Query 61 TGGTACCTGTGATCGTTGTGTTATTCG-TTTCGTTGCTCCCACTTGCGGCCATGGCGGTT 119
| |||||| | |||| |||||||| || ||| ||| ||||||||||| ||||||||||||
Sbjct 114 TTGTACCTCTCATCGCTGTGTTATGCGTTTTGGTT-CTCCCACTTGCAGCCATGGCGGTT 172
Query 120 GGAACACCATTCCACATTGAAGGATGTGTTTACTGCGACACTTGCCGTTTTGGATTCGAG 179
||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 173 GGAACGCCATTCCACATTGAAGGAAGTGTTTACTGCGACACTTGCCGCTTTGGATTCGAG 232
Query 180 ACAATTGCCACCAAATATATCCACGGGGCAAGAGTGAGAATAGTATGCAAAGACAGAGTG 239
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 233 ACAATCGCCACCCAATATATCCGCGGGGCAAGAGTGAGAATAGTATGCAAAGACAGAGTG 292
Query 240 ACACTGAAATCGGAGTTGGTTGGGGTGGCGGTGACGGGACCCAATGGGAAATACAAAGTC 299
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 293 ACACTAAAATCGGAGTTGGTTGGGGTGGCGGTGACGGGACCTGATGGGAAATACAAAGTC 352
Query 300 GCCGTCAGAGGAGACCGACAGGACCAGCAATGTCTGGCGGAGCTTGTTCACAGTCCTCTG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 353 GCCGTCAGAGGAGACCGACAGGACCAGCAATGTCTGGCGGAGCTTGTTCACAGTCCACTG 412
Query 360 TCCCGCTGCCAAGAGGCTGATCCTGGCAGAAGCACCGCCACCGTGATCCTCACGCGCTCC 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 413 TCCCGCTGCCAAGAGGCTGATCCTGGCAGAAGCACCGCTACCGTGATCCTCACGCGCTCC 472
Query 420 AACGGAGCCGCCTCTACTCGCCACTTTGCCAACGCCATGGGTTTCTTCAGGGACGAACCG 479
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 473 AACGGAGCCGCCTCTACTCGTCACTACGCCAACGCCATGGGTTTCTTCAGGGACGAACCG 532
Query 480 CTCCGTGGCTGTGCCGCTCTCCGCAAACGCTACCTCGCCGACGGCGATGTCCGGGCTATT 539
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 533 CTCCGTGGCTGCGCCGCTCTCCGCAAACGCTACCTCGCAGACGGCGATAACCGGGCTATT 592
Query 540 TGAGTCATCTTATGTTCTTGGTGAAACAGAACATAAAAGTTGATTTAGAGtttttattta 599
|||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 593 TGAGTCATCTTATGTTCTTGATGAAACAGAACACAAAAGTTTATTTAGAGTTTTTATTTA 652
Query 600 ttttcttttttattatGTTGTTGAGTCTCTAGAA-ATGGTGAGACTATTTAGACATATCT 658
||| || ||||||| | |||||||||||||| || |||||||||||||||||||||||||
Sbjct 653 TTT-CTATTTTATTGTATTGTTGAGTCTCTA-AAGATGGTGAGACTATTTAGACATATCT 710
Query 659 ACGA-AA-CTATATAAAATAAAGTATTTGCAACCTTCaaaaaaaaaaaTCGCATATCCTT 716
| || || | |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 711 AAGATAAACCATATAAAATAAAGTATTTGCAACCTTCAAAAAAAAAAATCTCATGTCCTT 770
Query 717 GGTAAGAAAAAGGAATGTGTTGTATGTTCTGTTATTTATGTAGGAT 762
|| |||||| |||||| ||||||||||||||||| |||||||||||
Sbjct 771 GGCAAGAAAGAGGAATTTGTTGTATGTTCTGTTACTTATGTAGGAT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5