BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487843
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10160.1 | Symbols: | Thioesterase superfamily protein | ch... 1325 0.0
> AT5G10160.1 | Symbols: | Thioesterase superfamily protein |
chr5:3185746-3187312 FORWARD LENGTH=886
Length=886
Score = 1325 bits (717), Expect = 0.0
Identities = 829/882 (94%), Gaps = 12/882 (1%)
Strand=Plus/Plus
Query 1 GTTGGAAGCTCTTTGAAAA--ACTCCCTTCGAATTCTCCGTCCCTTTCTCTCTGTCTCTC 58
||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||
Sbjct 1 GTTGGAAGCTCTTTGAAAACTCCTCCCTTCGAATTCTCCGTCTCTTTCTCTCTG--TATC 58
Query 59 GAGATCGAATCGGCAATGGCTGCTTCCAGCTCCGTTTTCACAGCCTCTCCGTCGCGAAAT 118
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 59 GAGATCGAATCGGCAATGGCTGCTTCAAGCTCCGTTTTCACAGTATCCCCGTCGCGAAAT 118
Query 119 CTTGTATCTATCCCTCTTCATCAGTCGCTTTCTCCGCCGTTGATCAGATCCAGCTCCGTC 178
|||| | |||| |||||||||||||| || ||||| |||||| | |||||||||||||||
Sbjct 119 CTTGCAGCTATTCCTCTTCATCAGTCCCTATCTCCACCGTTGCTTAGATCCAGCTCCGTC 178
Query 179 GCGTTTCGTCCCAAAAGACGATCCAGCTCACTCGTCTTGTGCTCCAGTGATGAATCAAAG 238
||||||||||||||| || ||||||||||||||||||| ||||| | |||||||||||||
Sbjct 179 GCGTTTCGTCCCAAACGAAGATCCAGCTCACTCGTCTTATGCTCAACTGATGAATCAAAG 238
Query 239 AGTACCACAGAGAAAGAGATCCCAATTGAACTCAGGTATGAGGCGTTTCCGACAGTGATG 298
|| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 239 AGCACCGCAGAGAAAGAGATCCCAATCGAACTAAGGTATGAGGCGTTTCCGACAGTGATG 298
Query 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAGATTCCCATTTCTGTTAGTGGATAGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GACATCAATAAGATACAAGAGATTTTGCCTCACAGATTCCCATTTCTGTTAGTTGATAGA 358
Query 359 GTGATAGAGTACACGGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGAC 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTGATAGAGTACACAGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGAC 418
Query 419 AATTTCTTTCCTGGGCATTTTCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAG 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 AATTTCTTTCCTGGGCATTTCCCTGAGAGACCTATAATGCCTGGAGTTCTCATGGTTGAG 478
Query 479 GCCATGGCTCAGGTGGGAGGTATAGTGATGCTACAACCAGAAGTGGGTGGATCTAGAAGC 538
|| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 479 GCAATGGCTCAAGTGGGAGGTATAGTGATGCTACAACCAGAAGTTGGCGGATCTAGAAGC 538
Query 539 AACTTCTTCTTTGCTGGCATCGACAAAGTCAGATTCAGAAAGCCAGTGATTGCAGGTGAT 598
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 AACTTCTTCTTTGCTGGAATCGACAAAGTCAGATTCAGGAAGCCAGTGATTGCAGGTGAT 598
Query 599 ACTCTGGTGATGAGGATGACGCTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATG 658
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGCTGGTGATGAGGATGACACTTGTGAAGTTGCAGAAGCGGTTTGGGATAGCGAAAATG 658
Query 659 GAAGGGAAAGCATATGTAGGGAACTCTGTGGTATGTGAAGGAGAGTTCTTGATGGCTATG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAGGGAAAGCATATGTAGGGAACTCTGTGGTATGTGAAGGAGAGTTCTTGATGGCTATG 718
Query 719 GGAAAAGAAGAGTGATCATCACGCCTTTG---CTT-CTTCTTCATACGGGCCTTGTGGCT 774
|||||||||||||||||| | ||||||| ||| |||||||||| |||||||||||||
Sbjct 719 GGAAAAGAAGAGTGATCA-C--GCCTTTGTTTCTTTCTTCTTCATATGGGCCTTGTGGCT 775
Query 775 GCTAATTAGTTGTCACTTCCTAAGTTGAGTCTCATTTCTATCTTCAATCTATGATGTTTG 834
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 GCTAATTAGTTGTCACATCCTAAGTTGAGTCTCATTTCTATCTTCAATTTATGATGTTTG 835
Query 835 TTTGCATATTATGATTATATTAAAAAGGGAACTTCA-TTTTA 875
|||||| ||||||||||||||||||| | ||||||| |||||
Sbjct 836 TTTGCACATTATGATTATATTAAAAAAGCAACTTCAGTTTTA 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5