BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487852
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10260.1 | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog H1... 1328 0.0
AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A | chr5:2... 409 3e-113
> AT5G10260.1 | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog
H1E | chr5:3219991-3221515 FORWARD LENGTH=838
Length=838
Score = 1328 bits (719), Expect = 0.0
Identities = 803/843 (95%), Gaps = 7/843 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGTGTGTCACCTTTAGCCAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTT 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGTGTGTCACCATTAGCAAAGTACAAGCTCGTGTTCCTTGGAGATCAATCCGTT 60
Query 61 GGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAGACCAGCATCATCACTCGTTTCATGTACGACAAATTCGATACCACTTATCAGGCA 120
Query 121 ACAATTGGAATTGATTTTTTGTCAAAAACAATGTACCTTGAGGTTAGGACTGTTCGTCTG 180
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ACCATTGGAATTGATTTTTTGTCAAAAACAATGTACCTTGAGGATAGGACTGTTCGTCTC 180
Query 181 CAACTATGGGACACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCCGA 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CAACTATGGGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGA 240
Query 241 GATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCAAATAGGCAGTCATTCTTGAACACC 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAATAGGCAGTCATTCTTGAACACA 300
Query 301 TCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTT 360
Query 361 GGTAACAAAACAGATCTCGTTGACAAAAGGCAAGTGTCGATTGAGGAAGGGGATAACAAA 420
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GGTAACAAAACAGATCTCGTCGACAAAAGGCAAGTGTCGATTGAGGAAGGTGATAACAAA 420
Query 421 GCTCGTGATTATGGAGTCATATTCATAGAGACCAGTGCAAAAGCAGGATTCAACATCAAG 480
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 421 GCTCGTGATTATGGAGTAATATTCATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAG 480
Query 481 CCACTATTCCGCAAGATTGCAGCAGCATTACCAGGAATGGAAACACTGTCTTCAACGAAA 540
||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 481 CCACTTTTTCGCAAGATTGCAGCAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAA 540
Query 541 CAAGAGGATATGGTTGATGTGAACCTAAAGACTTCGACCAATTCGTCTCAAGGGGAGCAA 600
||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 541 CAAGAGGATATGGTTGATGTGAATCTAAAGACTTCGAGCAATTCGGCTCAAGGGGAGCAA 600
Query 601 CAACGAGGTGGTTGTTCGTGTTAATCAATTTTAAATATATACGTTTGACAGCAACAGAAT 660
||||||||||||||| | ||||||||| |||||||||||||| |||||| ||||||
Sbjct 601 CAACGAGGTGGTTGTGCTTGTTAATCAGTTTTAAATATATAC-----ACAGCAGCAGAAT 655
Query 661 AGGAAGATTTTAAAACAAAAGATTCATAATTTGATGGAACAAATAAATCCTGGTATGAGG 720
||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 AGGAAGATTTTTAAACGAAAGATTCATAATTTTATGGAACAAATAAATCCTGGTATGAGG 715
Query 721 AAAGGAGATTACACTTTGAGACTCTAATTTT-CTTTGGAGAGGTTTTGTTTTCAATATAG 779
||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 716 AAAGGTGATTACACTTGGAGACTCTAGTTTTTCTTTGGAGAGGTTTTGTTTTCAATATAG 775
Query 780 AGTTGTGTAATAATGACGTGTGAAAGCTTATGAAGAAGAATGGCGATGTTTTGCTCTGTT 839
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 776 AGTTGTGTAATAAAGACGTCTGAAAGCTTATGAAGAAGAATGGC-ATGTTTTGCTCTGTT 834
Query 840 CTC 842
|||
Sbjct 835 CTC 837
> AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A | chr5:25963401-25964838
REVERSE LENGTH=849
Length=849
Score = 409 bits (221), Expect = 3e-113
Identities = 460/571 (81%), Gaps = 33/571 (6%)
Strand=Plus/Plus
Query 27 GTACAAGCTCGTGTTCCTT-GGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTT 85
||||||||| ||||| ||| || |||||| ||| || || || |||||||||||| |||
Sbjct 67 GTACAAGCTAGTGTT-CTTGGGGGATCAAGGCGTAGGGAAAACGAGCATCATCACTTGTT 125
Query 86 TCATGTACGACAAATTCGATACCACTTATCAGGCAACAATTGGAATTGATTTTTTGTCAA 145
||||||||| |||||||| |||| ||||||||||||||||||||| || ||||||||||
Sbjct 126 TCATGTACGGTAAATTCGACACCAGTTATCAGGCAACAATTGGAATAGACTTTTTGTCAA 185
Query 146 AAACAATGTAC-CT-TGAGGTTAGGACTGTTCG--T-C-----T-G--C----AAC--T- 185
|||||| | | | ||| | ||||||| |||| | | | | | ||| |
Sbjct 186 AAACAACG--CGGTATGAAGATAGGACTTTTCGTCTGCAATTGTGGTACAAAAAACTGTC 243
Query 186 --AT-GGGACACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCCGAGA 242
| |||| ||||||||||| ||||||||| ||| ||| |||||||||||||| ||||
Sbjct 244 CCTTGGGGATACTGCAGGACAAGAGAGATTTAAAAGCCTAGTACCAAGTTATATCAGAGA 303
Query 243 TTCTTCTGTTGCTGTTATTGTCTATGATGTTGCAAATAGGCAGTCATTCT-TGAACACCT 301
||||||||||||||||||||||||||||||||| | || ||| ||||| | | |||||||
Sbjct 304 TTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCAATCATT-TATAAACACCT 362
Query 302 CCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTG 361
|||||||||| || || |||||| |||| ||||| ||| ||||||| |||||||| ||||
Sbjct 363 CCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCTATGTCATTATTGTTCTTGTTG 422
Query 362 GTAACAAAACAGATCTCGTTGACAAAAGGCAAGTGTCGATTGAGGAAGGGGATAACAAAG 421
|||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||| || ||||
Sbjct 423 GTAACAAAACCGATCTTGTTAATAAAAGGCAAGTTTCGATAGAGGAAGGGGAGAATAAAG 482
Query 422 CTCGTGA-TTATGGAGTCATA-TTCATAGAGACCAGTGCAAAAGCAGGATTCAACATCAA 479
||||||| || ||||| | | ||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct 483 CTCGTGAGTT-TGGAG-CTTTGTTCATGGAGACTAGTGCTAAAGCTGGATTCAACATTAA 540
Query 480 GCCACTATTCCGCAAGATTGCAGCAGCATTACCAGGAATGGAAACACTGTCTTCAACGAA 539
||| | ||| | |||||| || | || |||| ||||| || || | |||| |||||
Sbjct 541 GCCTTTGTTCTGTAAGATTACATCGGCGTTACAAGGAAACGAGGCAGTTTCTTGGACGAA 600
Query 540 ACAAGAGGATATGGTTGATGTGAACCTAAAG 570
|||||||||| |||| |||||||| ||||||
Sbjct 601 ACAAGAGGATTTGGTGGATGTGAATCTAAAG 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5