BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487853
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10270.1 | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | c... 2700 0.0
AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase ... 1600 0.0
AT1G03740.1 | Symbols: | Protein kinase superfamily protein | ... 73.1 8e-12
> AT5G10270.1 | Symbols: CDKC;1 | cyclin-dependent kinase C;1 |
chr5:3221607-3224765 REVERSE LENGTH=1717
Length=1717
Score = 2700 bits (1462), Expect = 0.0
Identities = 1581/1638 (97%), Gaps = 10/1638 (1%)
Strand=Plus/Plus
Query 47 TCCCGGGAACGAAGATGGCGTTGGCAGCTTTCGGGCAGCTAAACCTCGAGGAACCTCCTC 106
|||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||
Sbjct 78 TCCCGGGAACGAAGATGGCGATGGCATCATTCGGGCAGCTAAATCTCGAGGAACCTCCTC 137
Query 107 CGATCTGGGGATCTCGCAGCGTTGATTGTTTTGAGAAGCTCGAACAAATCGGTGAAGGCA 166
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 138 CAATCTGGGGATCTCGCAGCGTTGATTGCTTTGAGAAGCTCGAACAAATTGGTGAAGGCA 197
Query 167 CTTACGGTCAAGTTTACATGGCTAAAGAAATCAAAACTGGTGAAATTGTGGCTCTCAAAA 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTTACGGTCAAGTTTACATGGCTAAAGAAATCAAAACTGGTGAAATTGTGGCTCTCAAAA 257
Query 227 AGATTCGTATGGACAATGAAAGAGAAGGGTTTCCTATAACAGCTATCAGGGAGATAAAGA 286
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 258 AGATACGTATGGACAATGAAAGAGAAGGGTTTCCTATAACAGCTATTAGAGAGATAAAGA 317
Query 287 TCCTAAAGAAGCTTCATCATGAAAATGTCATTCAGCTGAAAGAGATTGTGACTTCACCAG 346
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TTCTGAAGAAGCTTCATCATGAAAATGTCATTCAGCTGAAAGAGATTGTGACTTCACCAG 377
Query 347 GTCGGGACAGGGATGACCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGCATCTACA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GTCGGGACAGGGATGACCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGCATCTACA 437
Query 407 TGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCTGATCGTCCTGGACTGAGAT 466
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 438 TGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCAGATCGTCCTGGACTGAGAT 497
Query 467 TTACTGTTCCTCAAATTAAGTGTTACATGAAGCAATTGCTCACCGGGCTTCACTATTGTC 526
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 498 TTACTGTTCCTCAAATTAAGTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTC 557
Query 527 ATGTGAATCAAGTTCTTCACCGTGATATAAAAGGCTCAAATCTCCTTATTGACAATGAGG 586
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 558 ATGTGAATCAAGTGCTTCACCGTGATATAAAAGGCTCAAATCTCCTTATCGACAATGAGG 617
Query 587 GAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGATCGTTTTCTCATGATCATTCTGGGA 646
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |
Sbjct 618 GAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAA 677
Query 647 ATCTTACAAATCGTGTCATCACATTGTGGTATAGGCCCCCTGAATTACTACTCGGGGCTA 706
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 678 ATCTTACAAATCGTGTCATCACATTGTGGTATAGGCCCCCTGAATTACTACTTGGGGCTA 737
Query 707 CAAAATATGGCCCAGCAATTGACATGTGGTCAGTTGGTTGCATATTTGCCGAACTTTTAC 766
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 738 CAAAATATGGCCCAGCAATTGACATGTGGTCGGTTGGTTGCATATTTGCCGAACTTTTGC 797
Query 767 ATGCAAAACCAATTTTGCCTGGGAAAAATGAGCAAGAACAATTGAACAAGATATTTGAGC 826
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ATGCAAAACCAATCTTACCTGGGAAAAATGAGCAAGAACAATTGAACAAGATATTTGAGC 857
Query 827 TTTGTGGATCACCTGATGAAAA-CATTTGGCCCGGGGTTTCCAAGATGCCTTGGTACAAC 885
|||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||
Sbjct 858 TTTGTGGATCACCTGATGAAAAAC-TTTGGCCTGGGGTTTCCAAGATGCCTTGGTTCAAC 916
Query 886 AATTTCAAGCCTGCACGGCCCTTAAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGAT 945
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 917 AATTTCAAGCCTGCACGGCCCTTGAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGAT 976
Query 946 CGGCATGCTCTTGAATTACTGGAGAAAATGTTGGTGCTTGATCCATCACAGAGAATATCG 1005
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 977 CGGCATGCTCTTGAATTACTGGAGAAAATGTTGGTGCTTGATCCAGCACAGAGAATATCG 1036
Query 1006 GCAAAGGATGCTCTTGATGCCGAATACTTTTGGACTGATCCGCTGCCATGTGACCCAAAG 1065
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1037 GCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAG 1096
Query 1066 AGTCTGCCTACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCAG 1125
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 AGTCTGCCCACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCAG 1156
Query 1126 CGCCAAAATGAGGAAGCAGCAAAAAGACAGAAAGTGCAGCATCCACCGCAGCAGCACTCT 1185
|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1157 CGCCAAAACGAGGAAGCAGCAAAAAGACAGAAACTGCAGCATCCACCGCTGCAGCACTCT 1216
Query 1186 CGCTTACCCCCATTACAACATGGTGGACAGTCTCATGCTGCTCCACATTGGCCTGCTGGT 1245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1217 CGCTTACCCCCATTACAACATGGTGGACAGTCTCATGCTGCTCCACATTGGCCTGCAGGT 1276
Query 1246 CCAAACCATCCCACTAACAACGCACCACCACAAGTACCTGCTGGACCCAGCCACCACTTC 1305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1277 CCAAACCATCCCACTAACAACGCACCACCACAAGTACCTGCTGGACCCAGCCACAACTTC 1336
Query 1306 TATGGGAAGCCGCGTGGTCCACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGC 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TATGGGAAGCCGCGTGGTCCACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGC 1396
Query 1366 GGGGGTTATAATCAAAGTCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGG 1425
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 GGGGGTTATAATCAAAGCCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACGT 1456
Query 1426 GGAGCTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCGCGTACGGGGTTGGACCA 1485
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1457 GGAGCTCCTTATGTGGCTGGTCCTAGAGGGCCTAGTGGTGGCCCGTACGGGGTTGGACCT 1516
Query 1486 CCTAACTACACACAAGGTGGCCAGTATGGTGGCTCTGGTAGCTCTGGAAGAGGGCAGAAC 1545
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1517 CCTAACTACACACAAGGTGGTCAGTATGGTGGCTCTGGTAGCTCGGGAAGAGGGCAGAAT 1576
Query 1546 CCGAGAAACCAGCAATACGGATGGCAACAGTAAAGAGCTCTAATGATTTGTTGATCTGAT 1605
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 CAGAGAAACCAGCAATACGGATGGCAACAGTAAAGAGCTCTAATGATTTGTTGATCTGAT 1636
Query 1606 ATCTTACTCTTACATTTAATGTGATACTAGTAA----C-AATA---GATTAATATGAGAA 1657
||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 1637 ATCTTACTCTTACATTTAATGTGATACTAGTAATAAACTAATAATAGATTAATATGAGAA 1696
Query 1658 ATTGAAACTCTTTCTTTT 1675
| |||| |||||||||||
Sbjct 1697 ACTGAATCTCTTTCTTTT 1714
Score = 80.5 bits (43), Expect = 5e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1 GAGAAAAGGAAAGCGATCGAGAAAGACGAAATTTGATCATCGGAGT 46
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 7 GAGAAAAGGAAAGCGATCGAGAAAGACGTAATTTGATCATCGGAGT 52
> AT5G64960.1 | Symbols: CDKC2, CDKC;2 | cyclin dependent kinase
group C2 | chr5:25955381-25958995 FORWARD LENGTH=2135
Length=2135
Score = 1600 bits (866), Expect = 0.0
Identities = 1302/1507 (86%), Gaps = 52/1507 (3%)
Strand=Plus/Plus
Query 73 GCTTTCGGGCAGCTAAACCTCGAGGAACCTCCTCCGATCTGGGGATCTCGCAGCGTTGAT 132
||||| |||||| |||| || ||||| ||||| ||||| ||||||||||| || || |||
Sbjct 129 GCTTTTGGGCAGTTAAATCTAGAGGAGCCTCCACCGATTTGGGGATCTCGTAGTGTCGAT 188
Query 133 TGTTTTGAGAAGCTCGAACAAATCGGTGAAGGCACTTACGGTCAAGTTTACATGGCTAAA 192
|| || |||||||| ||||| || |||||||| |||||||| ||||| ||||||||||||
Sbjct 189 TGCTTCGAGAAGCTTGAACAGATTGGTGAAGGAACTTACGGCCAAGTGTACATGGCTAAA 248
Query 193 GAAATCAAAACTGGTGAAATTGTGGCTCTCAAAAAGATTCGTATGGACAATGAAAGAGAA 252
||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 249 GAAATTAAAACTGGTGAAATCGTGGCTCTGAAAAAGATCCGTATGGACAATGAAAGAGAA 308
Query 253 GGGTTTCCTATAACAGCTATCAGGGAGAT-AAAGATCCTAAAGAAGCTTCATCATGAAAA 311
|||||||| ||||| |||||| ||||||| ||| || || |||||||| |||||||||||
Sbjct 309 GGGTTTCCGATAACCGCTATCCGGGAGATCAAA-ATTCTGAAGAAGCTGCATCATGAAAA 367
Query 312 TGTCATTCAGCTGAAAGAGATTGTGACTTCACCAGGTCGGGACAGGGATGACCAAGGAAA 371
|||||| || ||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 368 TGTCATCCATTTGAAAGAGATTGTTACTTCTCCAGGTCGAGATAGGGATGATCAAGGAAA 427
Query 372 GCCAGATAATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGA 431
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 428 GCCAGATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGA 487
Query 432 TTTGACTGGACTAGCTGATCGTCCTGGACTGAGATTTACTGTTCCTCAAATTAAGTGTTA 491
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 488 CTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCCTCAGATAAAGTGTTA 547
Query 492 CATGAAGCAATTGCTCACCGGGCTTCACTATTGTCATGTGAATCAAGTTCTTCACCGTGA 551
|||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 CATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGA 607
Query 552 TATAAAAGGCTCAAATCTCCTTATTGACAATGAGGGAAATTTAAAGCTGGCTGATTTTGG 611
||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 608 TATAAAAGGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTGG 667
Query 612 GCTTGCACGATCGTTTTCTCATGATCATTCTGGGAATCTTACAAATCGTGTCATCACATT 671
|||||| || || | ||||||||||||| |||| || || ||||||||||||||||| ||
Sbjct 668 GCTTGCTCGGTCATATTCTCATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTT 727
Query 672 GTGGTATAGGCCCCCTGAATTACTACTCGGGGCTACAAAATATGGCCCAGCAATTGACAT 731
||||||||||||||||||||| |||| || || || |||||||| ||||| ||||||||
Sbjct 728 GTGGTATAGGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT 787
Query 732 GTGGTCAGTTGGTTGCATATTTGCCGAACTTTT-ACATGCAAAACCAATTTTGCCTGGGA 790
|||||||||||| ||||||||||| |||||||| | ||| ||||||||| ||||||||||
Sbjct 788 GTGGTCAGTTGGATGCATATTTGCTGAACTTTTGA-ATGGAAAACCAATCTTGCCTGGGA 846
Query 791 AAAATGAGCAA-GAACAATTGAACAAGATATT-TGAGCTTTGTGGATCACCTGATGAAAA 848
||| |||| || ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 847 AAACTGAG-AATGAACAATTGAATAAGAT-TTATGAGCTTTGTGGATCACCTGATGAAAG 904
Query 849 CATTTGGCCCGGGGTTTCCAAGATGCCTTGGTACAA-CAATTTCAAGCCTGCACGGCCCT 907
|| ||||| || |||||||||||||||||||| || ||| | || | | | |||||||
Sbjct 905 CAACTGGCCTGGAGTTTCCAAGATGCCTTGGTATAACCAAATGAAATCAT-CTCGGCCCT 963
Query 908 TAAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGATCGGCATGCTCTTGAATTACTGG 967
||||||| || ||||| ||| ||| ||||||||||||||| ||||| |||||| |||| |
Sbjct 964 TAAAGAGACGCGTAAGGGAGATCTACAGACACTTTGATCGCCATGCCCTTGAACTACTTG 1023
Query 968 AGAAAATGTTGGTGCTTGATCCATCACAGAGAATATCG-GCAAAGGATGCTCTTGATGCC 1026
||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 1024 AGAAAATGTTGGTACTTGACCCATCTCAGAGAATAT-GCGCAAAGGATGCTCTTGATGCT 1082
Query 1027 GAATACTTTTGGACTGATCCGCTGCCATGTGACCCAAAGAGTCTGCCTACATATGAATCA 1086
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1083 GAGTACTTTTGGACTGATCCGCTGCCATGTGATCCAAAGAGTCTACCGACATATGAATCA 1142
Query 1087 TCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCA-GCGCCAAAATGAGGAAGCAGC 1145
|||||||||||||||||||||||||| ||||||||| | ||| || ||||||||||||||
Sbjct 1143 TCACATGAGTTCCAGACAAAGAAAAAACGGCAACAG-ATGCGTCATAATGAGGAAGCAGC 1201
Query 1146 -AAAAAGACAGAAAGTGCAGCATCCACCGCAGCAGCACTCTCGCTTACCCCCATTA-CAA 1203
||||| ||||||| |||||||||||| |||||| || ||||| ||||| ||| | |||
Sbjct 1202 CAAAAA-ACAGAAACTGCAGCATCCACAGCAGCAACATTCTCGTTTACCTCCAC-AGCAA 1259
Query 1204 CATGGTG--GAC-AGTCTCATGCTGCTCCACATTGGCCTGCTGGTCCAAACCATCCC-AC 1259
|| |||| | | |||||||||| ||||||| |||||||||||| |||||||| ||| |
Sbjct 1260 CACGGTGTTGGCCAGTCTCATGCCGCTCCACTTTGGCCTGCTGGACCAAACCA-CCCTA- 1317
Query 1260 T-AACAAC---GCACCACCAC---AAGTACCTGCTGGACCCAGCCACCACT-TCTATGGG 1311
| |||||| |||||||||| || |||||||||| |||| ||| | | ||
Sbjct 1318 TGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG---GCCATTACTATGGA-GGA 1373
Query 1312 AAGCCGCGTGGTC---CACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGCGGG 1368
||||| |||||| |||||| ||||||||| |||||||||||||||||||||| | ||
Sbjct 1374 AAGCCCCGTGGTGGTGCACCTGTTCCAAACCGGTACCCTCCTAGCGGAAACCAGA-CTGG 1432
Query 1369 -GGTTATAATCA--A-AGTCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACG 1424
||||||||| | | || || |||||||||||||| ||| |||||||||||||||| ||
Sbjct 1433 TGGTTATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGAGCATATCCTCCACAAGGTCG 1492
Query 1425 GGGAGCTCCTTATGTG-GCTGGTCCTAGAGGGCCTAGTGGTGGCGCGTACGGGGTTGGAC 1483
|| || || |||| | || ||||||||||| ||||| |||||| || || |||||||
Sbjct 1493 TGGTGCACCATATG-GCGCCGGTCCTAGAGGACCTAGCGGTGGC---TATGGTGTTGGAC 1548
Query 1484 CACCTAACTACACACAAGGTGGC---CAGTATGGTGGCTCTGGTAGCTCTGGAAGAGGGC 1540
|||| |||||| |||||||||| ||||||||||| |||||| ||||||||||||| |
Sbjct 1549 CACCCAACTACTCACAAGGTGGTGGTCAGTATGGTGGATCTGGTGGCTCTGGAAGAGGTC 1608
Query 1541 AGAACCC 1547
|||||||
Sbjct 1609 AGAACCC 1615
> AT1G03740.1 | Symbols: | Protein kinase superfamily protein
| chr1:933512-937043 FORWARD LENGTH=3017
Length=3017
Score = 73.1 bits (39), Expect = 8e-12
Identities = 64/76 (84%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 538 GTTCTTCACCGTGATATAAAAGGCTCAAATCTCCTTATTGACAATGAGGGAAAT-TTAAA 596
||||||||||||||||||||||||||||| || || ||||||| | ||||| | || ||
Sbjct 1540 GTTCTTCACCGTGATATAAAAGGCTCAAACCTACTAATTGACAGTAAGGGAG-TCTTGAA 1598
Query 597 GCTGGCTGATTTTGGG 612
| | || |||||||||
Sbjct 1599 GATAGCAGATTTTGGG 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5