BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487854
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORW... 673 0.0
> AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORWARD
LENGTH=991
Length=991
Score = 673 bits (364), Expect = 0.0
Identities = 396/410 (97%), Gaps = 8/410 (2%)
Strand=Plus/Plus
Query 1552 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 487
Query 1612 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTAAGGCTGAGGGAGAAAGTCTTATAGG 1671
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 488 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTTAGGCTGAGGGAGAAAGTCTTATAGG 547
Query 1672 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 607
Query 1732 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 667
Query 1792 TAGGGCATAGTGATGGCTACTTATGAACTGCTTCCCAATTAAAGACAAAAAT-AAGATCG 1850
||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||
Sbjct 668 TAGGGCATAGTGATGGCAACTAATGAACTGCTTCCCAATTAAAGACAAAAAACAA-ATCG 726
Query 1851 ATTGGTATGTATGTGTTTGTCCATTGGAGACGGCTGTTCCCGAGATGATACTGATCGTTG 1910
|||| | | |||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 727 ATTG-T-T--ATGTGTTTGTCCGTTGGAGACGGCTGTTCCCGAGATGATACTGAT-GTTG 781
Query 1911 CTTTAAGACAAGAGGAAGAATTTACATTGAATGATATTTTTTCACACTGG 1960
||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 782 CTTTAAGACAAGAGGAAGAATTTACATTGAATGAT-TTTTATCACACTGG 830
Score = 272 bits (147), Expect = 9e-72
Identities = 157/162 (97%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 410 GATGTTCCAGCAATGTTGGGCGTAACCGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 469
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 GATGTTCCAGCAATGTTGGGCGTAACGGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 298
Query 470 AATGAAGAGTAAGCAAGAAGATTTTGAACCGTCACCACTTTCGTCACTCATTGGAATTTC 529
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 299 AATGAAGAGTAAGCAAGAAGATGTTGAACCGTCACCACTCTCGTCACTCATTGGAATTTC 358
Query 530 ATTCAGGAACCTAACGGATGCTGATGATATTCGAATCACGAG 571
||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 ATTCAGGAACCTAACCTATGCTGATGATATTCGAATCACGAG 400
Score = 219 bits (118), Expect = 1e-55
Identities = 197/232 (85%), Gaps = 18/232 (8%)
Strand=Plus/Plus
Query 40 GGTAAACTCAATTAAAACCGAGTTG---ATAAAGCCACACTACTAATCCTTTTTGTTCAG 96
||| |||||||| |||||||| ||| |||||| | |||||||||||| |||| |||||
Sbjct 1 GGTGAACTCAATCAAAACCGACTTGATCATAAAG-C-CACTACTAATCC-TTTT-TTCAG 56
Query 97 TTCTAAACACTCTTTGTTTTTAGTGTACCACTTTGCAATAGATGTAGATGCATGACAGAT 156
||||||||||||||| ||||| ||||||||||||| | | ||||||||||||||||
Sbjct 57 TTCTAAACACTCTTT-TTTTT-CTGTACCACTTTGC---A-A--TAGATGCATGACAGAT 108
Query 157 GATGCTTATATACTATGATGATGAATGGAAGTATCATACAATGAAATATTATATGAATAC 216
||||||||||||| ||||||| || |||||||||||| ||| |||||||||||||||||
Sbjct 109 GATGCTTATATACCATGATGAGGAGTGGAAGTATCATTCAAAAAAATATTATATGAATAC 168
Query 217 CTTAAAAGGGT-TGTGGAGATACATACAACTTGAACAGGGATGGAAAGAGAT 267
||||||||||| | ||||||| || | |||||||| | || |||||||||
Sbjct 169 CTTAAAAGGGTCT-TGGAGATGCAAATT-CTTGAACAAGAATAGAAAGAGAT 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98342867655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5