BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487854 Length=1985 Score E Sequences producing significant alignments: (Bits) Value AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORW... 673 0.0 > AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORWARD LENGTH=991 Length=991 Score = 673 bits (364), Expect = 0.0 Identities = 396/410 (97%), Gaps = 8/410 (2%) Strand=Plus/Plus Query 1552 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 1611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 428 TTTGAATTTTGTGCACGGAACCTGTGATCTTCATTATATAGAAGACACAGAAGAAAAAGA 487 Query 1612 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTAAGGCTGAGGGAGAAAGTCTTATAGG 1671 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 488 CAAGAGCTCAAGATATGCCATTGGGTGCAATACTTAGGCTGAGGGAGAAAGTCTTATAGG 547 Query 1672 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 1731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 TTTTAAAGATGGTGGAGATTTAGATCATTTTCTGCACCCACCTCTCCCCTAACCAGCTCC 607 Query 1732 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 1791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 TCCCTAGTGGTCAAAATCTGTCATATCAAGCCTGTCACCATCATCAATAGGGTTTGGTAC 667 Query 1792 TAGGGCATAGTGATGGCTACTTATGAACTGCTTCCCAATTAAAGACAAAAAT-AAGATCG 1850 ||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |||| Sbjct 668 TAGGGCATAGTGATGGCAACTAATGAACTGCTTCCCAATTAAAGACAAAAAACAA-ATCG 726 Query 1851 ATTGGTATGTATGTGTTTGTCCATTGGAGACGGCTGTTCCCGAGATGATACTGATCGTTG 1910 |||| | | |||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 727 ATTG-T-T--ATGTGTTTGTCCGTTGGAGACGGCTGTTCCCGAGATGATACTGAT-GTTG 781 Query 1911 CTTTAAGACAAGAGGAAGAATTTACATTGAATGATATTTTTTCACACTGG 1960 ||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 782 CTTTAAGACAAGAGGAAGAATTTACATTGAATGAT-TTTTATCACACTGG 830 Score = 272 bits (147), Expect = 9e-72 Identities = 157/162 (97%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 410 GATGTTCCAGCAATGTTGGGCGTAACCGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 469 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 239 GATGTTCCAGCAATGTTGGGCGTAACGGTTGAGAAAAGTATGTGCTAATTTACTATTCTA 298 Query 470 AATGAAGAGTAAGCAAGAAGATTTTGAACCGTCACCACTTTCGTCACTCATTGGAATTTC 529 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 299 AATGAAGAGTAAGCAAGAAGATGTTGAACCGTCACCACTCTCGTCACTCATTGGAATTTC 358 Query 530 ATTCAGGAACCTAACGGATGCTGATGATATTCGAATCACGAG 571 ||||||||||||||| ||||||||||||||||||||||||| Sbjct 359 ATTCAGGAACCTAACCTATGCTGATGATATTCGAATCACGAG 400 Score = 219 bits (118), Expect = 1e-55 Identities = 197/232 (85%), Gaps = 18/232 (8%) Strand=Plus/Plus Query 40 GGTAAACTCAATTAAAACCGAGTTG---ATAAAGCCACACTACTAATCCTTTTTGTTCAG 96 ||| |||||||| |||||||| ||| |||||| | |||||||||||| |||| ||||| Sbjct 1 GGTGAACTCAATCAAAACCGACTTGATCATAAAG-C-CACTACTAATCC-TTTT-TTCAG 56 Query 97 TTCTAAACACTCTTTGTTTTTAGTGTACCACTTTGCAATAGATGTAGATGCATGACAGAT 156 ||||||||||||||| ||||| ||||||||||||| | | |||||||||||||||| Sbjct 57 TTCTAAACACTCTTT-TTTTT-CTGTACCACTTTGC---A-A--TAGATGCATGACAGAT 108 Query 157 GATGCTTATATACTATGATGATGAATGGAAGTATCATACAATGAAATATTATATGAATAC 216 ||||||||||||| ||||||| || |||||||||||| ||| ||||||||||||||||| Sbjct 109 GATGCTTATATACCATGATGAGGAGTGGAAGTATCATTCAAAAAAATATTATATGAATAC 168 Query 217 CTTAAAAGGGT-TGTGGAGATACATACAACTTGAACAGGGATGGAAAGAGAT 267 ||||||||||| | ||||||| || | |||||||| | || ||||||||| Sbjct 169 CTTAAAAGGGTCT-TGGAGATGCAAATT-CTTGAACAAGAATAGAAAGAGAT 218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98342867655 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5