BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487856
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain pro... 1982 0.0
AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53 |... 534 7e-151
AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORW... 244 1e-63
> AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain protein
92 | chr5:3232569-3234210 FORWARD LENGTH=1466
Length=1466
Score = 1982 bits (1073), Expect = 0.0
Identities = 1252/1333 (94%), Gaps = 34/1333 (3%)
Strand=Plus/Plus
Query 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
Query 61 GGAATAAGAAGCAGTTAGTGGTTGT----GAAGGAAGGAGGCAAGTAACCAAATCTCAGA 116
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 120
Query 117 GACAATTATAACAGTATAGAGAAGGAAG---G--AAGAAAAAGAAACCATTGTTGATTTA 171
|||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 121 GACAATTATAACAGTATAGAGAAGGAAGAAAGAAAAGAAAAAGAAACCGTTGTTGATTTA 180
Query 172 GATAC-----AGAGAAGATCATCTAACATGGGAAGATCTCCTATC-CGTGATGACTCTGG 225
||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 181 GATACAGAGAAGAGAAGATCATCTAACATGGGAAGATCTCCTATCTC-TGATGACTCTGG 239
Query 226 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTCCAAAA 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTTCAAAA 299
Query 286 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 359
Query 346 GAGTTGCAGGCTAAGATGGACTAATTACTTGAGACCCGACATCAAGCGAGGGAGATTCTC 405
||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||
Sbjct 360 GAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTC 419
Query 406 TCCGGACGAGGAACAGACTATCTTGAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 465
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 479
Query 466 GATTGCAAATCAGTTACCAGGGAGAACAGACAACGAGATCAAGAATTTCTGGAACACCCA 525
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 480 GATTGCGAATCAGTTACCAGGGAGAACAGATAACGAGATCAAGAATTTCTGGAACACTCA 539
Query 526 TTTGAAGAAAAAGCTGATTCAGATGGGTTTTGACCCAATGACTCATCGTCCAAGAACCGA 585
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 540 TTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCGTCCAAGAACCGA 599
Query 586 TATCTTCTCTGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 645
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATCTTCTCCGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 659
Query 646 TCTGCAGCAACAGTTTCCGATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 705
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTGCAACAACAGTTTCCTATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 719
Query 706 GGCCAAACTTCAATTGTTTCAATACCTTCTTCAACCATCTTCCATGAATAGCA-T-T-AA 762
||||||||| |||||||| ||||||||||||||||| |||||||||| || || | | ||
Sbjct 720 GGCCAAACTCCAATTGTTCCAATACCTTCTTCAACCGTCTTCCATGAGTAACAATGTTAA 779
Query 763 CCCTAATAACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCCTTCAAAGAGACCAG 822
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CCCTAATGACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCTTTCAAAGAGACCAG 839
Query 823 TACTAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGTTCATATCTTCAGGACTT 882
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 840 TAATAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGCTCTTATCTTCAGGACTT 899
Query 883 CAACAGCTTACCATCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTACC 942
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 CCACAGCTTACCTTCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTCCC 959
Query 943 CCAGAATCTTGATGACAATCACTTCAAATTCTTCACTCAAAGAGAAAACCTACCGGTGTC 1002
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 960 CCAGAATCTTGATGACAATCACTTCAAATTCTCCACTCAAAGAGAAAACCTACCCGTGTC 1019
Query 1003 TCCAATCTGGCTCTCGGATCCCTCCAGCGCAACTCAGAGTCATATACCTTCTGCTGTGAA 1062
||||||||||||||||||||| |||||| |||||| | | | | | ||||||
Sbjct 1020 TCCAATCTGGCTCTCGGATCCATCCAGCACAACTC-----C-TG--C-T-CA--TGTGAA 1067
Query 1063 TGATGATCTGATTTTAAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTTC 1122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGATGATCTGATTTTTAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTTC 1127
Query 1123 AAGCGGTCAAGAATCAGCAGCTTCAGCTTCAGCTGCATGGCCTGAGCATCTATTGGATGA 1182
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 AAGCGGTCAAGAATCAGGAGCTTCAGCTTCAGCTGCATGGCCTGATCATCTATTGGATGA 1187
Query 1183 TTCTATATTTTCGGACATTCCTTAGCCCTTCTTTTGTCTTAATTTTCAGGTCTGT--TTT 1240
|||||||||||| |||||||||||||| |||||||||||| | |||||||| ||| |||
Sbjct 1188 TTCTATATTTTCCGACATTCCTTAGCC-TTCTTTTGTCTTTACTTTCAGGTATGTACTTT 1246
Query 1241 GGAGGAACTCAAATCGAATTTACTCTTGGAATTGTGCTTGTTGGAGAATTTTATTTGCAT 1300
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1247 GGAGGAACTCAAATCAAATTTACTCTTGGAATTGTGCTTGTTGGAGATTTTTATTTGCCT 1306
Query 1301 ATCTATATATATA 1313
|||||||||||||
Sbjct 1307 ATCTATATATATA 1319
Score = 124 bits (67), Expect = 2e-27
Identities = 77/81 (95%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 1313 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATAACTCATATGCAT--GTTGTTGTC 1370
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1350 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATA-CTCATATGCATATGTTGTTGTC 1408
Query 1371 AATGTTCTCTAGCATATGTCT 1391
|||||||| ||||||||||||
Sbjct 1409 AATGTTCTTTAGCATATGTCT 1429
> AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53
| chr5:26068290-26069652 FORWARD LENGTH=1177
Length=1177
Score = 534 bits (289), Expect = 7e-151
Identities = 475/562 (85%), Gaps = 23/562 (4%)
Strand=Plus/Plus
Query 194 ATGGGAAGATCTCCTATC-CGTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACT-CCTG 251
|||||||||||||||| | | ||||| ||||||| ||||||||||| ||| | ||||
Sbjct 1 ATGGGAAGATCTCCTAGCTC-AGATGAAACTGGTCTGAAGAAAGGTCCATGG-TTGCCTG 58
Query 252 ATGAAGATGAGAAACTTG-TCAACTATGTCCAAAAACATGGTCATAGTAGCTGGAGAGCC 310
| |||||||| |||| || |||| ||| | || |||||||| ||||| |||||||| |||
Sbjct 59 AAGAAGATGATAAAC-TGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCC 117
Query 311 CTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAAT 370
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 118 CTTCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAAC 177
Query 371 TACTTGAGACCCGACATCAAGCGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTG 430
|| |||||||| ||||| |||||||| | ||||||| |||| || ||| |||| ||| ||
Sbjct 178 TATTTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTG 237
Query 431 AACCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCAAATCAGTTACCAGGGA-G 489
||||||||| | ||||| || ||||||||||||| |||||||| || ||||| || | |
Sbjct 238 AACCTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGG-ACG 296
Query 490 AACAGACAACGAGATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGAT 549
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 297 AACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGAT 356
Query 550 GGGTTTTGACCCAATGACTCATC-GTCCAAGAACCGAT-AT--CTTCTCTGGCTTATCTC 605
|||||||||||| ||||| |||| | |||||||||||| || |||||| | |||||||
Sbjct 357 GGGTTTTGACCCCATGACCCATCAG-CCAAGAACCGATGATATCTTCTCAAGTTTATCTC 415
Query 606 AGCTCATGTCTTTGTCTTCTAACCTGAGAGG-CTTTGTTGATCTGCAGCAACAGTTTCCG 664
||||||||||| ||||| ||||| ||||| ||| |||||||||||||||||||||||
Sbjct 416 AGCTCATGTCTCTGTCT---AACCTAAGAGGACTT-GTTGATCTGCAGCAACAGTTTCCA 471
Query 665 ATTGATCAAGAACACA-CTATACTCAAACTCCAAACCGAGATGGCCAAACTTCAATTGTT 723
|| || | || || | | |||| || |||||||| |||||||| || || ||||||||
Sbjct 472 ATGGA--A-GACCA-AGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTT 527
Query 724 TCAATACCTTCTTCAACCATCT 745
||||||||||||||||| |||
Sbjct 528 CCAATACCTTCTTCAACCTTCT 549
> AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORWARD
LENGTH=991
Length=991
Score = 244 bits (132), Expect = 1e-63
Identities = 148/155 (95%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 896
Query 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGA-GG---CAAGTAACCAAATCTCAGA 116
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct 897 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 956
Query 117 GACAATTATAACAGTATAGAGAAGGAAGGAAGAAA 151
|||||||||||||||||||||||||||| ||||||
Sbjct 957 GACAATTATAACAGTATAGAGAAGGAAGAAAGAAA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5