BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487856 Length=1412 Score E Sequences producing significant alignments: (Bits) Value AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain pro... 1982 0.0 AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53 |... 534 7e-151 AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORW... 244 1e-63 > AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain protein 92 | chr5:3232569-3234210 FORWARD LENGTH=1466 Length=1466 Score = 1982 bits (1073), Expect = 0.0 Identities = 1252/1333 (94%), Gaps = 34/1333 (3%) Strand=Plus/Plus Query 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60 Query 61 GGAATAAGAAGCAGTTAGTGGTTGT----GAAGGAAGGAGGCAAGTAACCAAATCTCAGA 116 ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 120 Query 117 GACAATTATAACAGTATAGAGAAGGAAG---G--AAGAAAAAGAAACCATTGTTGATTTA 171 |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| Sbjct 121 GACAATTATAACAGTATAGAGAAGGAAGAAAGAAAAGAAAAAGAAACCGTTGTTGATTTA 180 Query 172 GATAC-----AGAGAAGATCATCTAACATGGGAAGATCTCCTATC-CGTGATGACTCTGG 225 ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 181 GATACAGAGAAGAGAAGATCATCTAACATGGGAAGATCTCCTATCTC-TGATGACTCTGG 239 Query 226 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTCCAAAA 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 TCTCAAGAAAGGTCCTTGGACTCCTGATGAAGATGAGAAACTTGTCAACTATGTTCAAAA 299 Query 286 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ACATGGTCATAGTAGCTGGAGAGCCCTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAA 359 Query 346 GAGTTGCAGGCTAAGATGGACTAATTACTTGAGACCCGACATCAAGCGAGGGAGATTCTC 405 ||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||| Sbjct 360 GAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATCAAGAGAGGGAGATTCTC 419 Query 406 TCCGGACGAGGAACAGACTATCTTGAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 465 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 420 TCCGGACGAGGAACAGACTATCTTGAATCTTCATTCAGTTCTTGGAAACAAGTGGTCAAC 479 Query 466 GATTGCAAATCAGTTACCAGGGAGAACAGACAACGAGATCAAGAATTTCTGGAACACCCA 525 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 480 GATTGCGAATCAGTTACCAGGGAGAACAGATAACGAGATCAAGAATTTCTGGAACACTCA 539 Query 526 TTTGAAGAAAAAGCTGATTCAGATGGGTTTTGACCCAATGACTCATCGTCCAAGAACCGA 585 ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 540 TTTGAAGAAGAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCGTCCAAGAACCGA 599 Query 586 TATCTTCTCTGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 645 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TATCTTCTCCGGCTTATCTCAGCTCATGTCTTTGTCTTCTAACCTGAGAGGCTTTGTTGA 659 Query 646 TCTGCAGCAACAGTTTCCGATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 705 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCTGCAACAACAGTTTCCTATTGATCAAGAACACACTATACTCAAACTCCAAACCGAGAT 719 Query 706 GGCCAAACTTCAATTGTTTCAATACCTTCTTCAACCATCTTCCATGAATAGCA-T-T-AA 762 ||||||||| |||||||| ||||||||||||||||| |||||||||| || || | | || Sbjct 720 GGCCAAACTCCAATTGTTCCAATACCTTCTTCAACCGTCTTCCATGAGTAACAATGTTAA 779 Query 763 CCCTAATAACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCCTTCAAAGAGACCAG 822 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 780 CCCTAATGACTTTGACACTCTCAGTCTCCTTAACTCTATTGCCTCTTTCAAAGAGACCAG 839 Query 823 TACTAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGTTCATATCTTCAGGACTT 882 || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 840 TAATAATACCACCAGCAACAATCTCGACCTCGGTTTCCTCGGCTCTTATCTTCAGGACTT 899 Query 883 CAACAGCTTACCATCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTACC 942 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 900 CCACAGCTTACCTTCCCTGAAAACCCTAAATTCCAACATGGAACCATCATCTGTTTTCCC 959 Query 943 CCAGAATCTTGATGACAATCACTTCAAATTCTTCACTCAAAGAGAAAACCTACCGGTGTC 1002 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 960 CCAGAATCTTGATGACAATCACTTCAAATTCTCCACTCAAAGAGAAAACCTACCCGTGTC 1019 Query 1003 TCCAATCTGGCTCTCGGATCCCTCCAGCGCAACTCAGAGTCATATACCTTCTGCTGTGAA 1062 ||||||||||||||||||||| |||||| |||||| | | | | | |||||| Sbjct 1020 TCCAATCTGGCTCTCGGATCCATCCAGCACAACTC-----C-TG--C-T-CA--TGTGAA 1067 Query 1063 TGATGATCTGATTTTAAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTTC 1122 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1068 TGATGATCTGATTTTTAACCAATACGGTATTGAAGATGTCAATAGCAATATCACATCTTC 1127 Query 1123 AAGCGGTCAAGAATCAGCAGCTTCAGCTTCAGCTGCATGGCCTGAGCATCTATTGGATGA 1182 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1128 AAGCGGTCAAGAATCAGGAGCTTCAGCTTCAGCTGCATGGCCTGATCATCTATTGGATGA 1187 Query 1183 TTCTATATTTTCGGACATTCCTTAGCCCTTCTTTTGTCTTAATTTTCAGGTCTGT--TTT 1240 |||||||||||| |||||||||||||| |||||||||||| | |||||||| ||| ||| Sbjct 1188 TTCTATATTTTCCGACATTCCTTAGCC-TTCTTTTGTCTTTACTTTCAGGTATGTACTTT 1246 Query 1241 GGAGGAACTCAAATCGAATTTACTCTTGGAATTGTGCTTGTTGGAGAATTTTATTTGCAT 1300 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1247 GGAGGAACTCAAATCAAATTTACTCTTGGAATTGTGCTTGTTGGAGATTTTTATTTGCCT 1306 Query 1301 ATCTATATATATA 1313 ||||||||||||| Sbjct 1307 ATCTATATATATA 1319 Score = 124 bits (67), Expect = 2e-27 Identities = 77/81 (95%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 1313 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATAACTCATATGCAT--GTTGTTGTC 1370 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1350 ACTCATGTTGTAGAATGTACAGTACAGAGATTTCATA-CTCATATGCATATGTTGTTGTC 1408 Query 1371 AATGTTCTCTAGCATATGTCT 1391 |||||||| |||||||||||| Sbjct 1409 AATGTTCTTTAGCATATGTCT 1429 > AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53 | chr5:26068290-26069652 FORWARD LENGTH=1177 Length=1177 Score = 534 bits (289), Expect = 7e-151 Identities = 475/562 (85%), Gaps = 23/562 (4%) Strand=Plus/Plus Query 194 ATGGGAAGATCTCCTATC-CGTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACT-CCTG 251 |||||||||||||||| | | ||||| ||||||| ||||||||||| ||| | |||| Sbjct 1 ATGGGAAGATCTCCTAGCTC-AGATGAAACTGGTCTGAAGAAAGGTCCATGG-TTGCCTG 58 Query 252 ATGAAGATGAGAAACTTG-TCAACTATGTCCAAAAACATGGTCATAGTAGCTGGAGAGCC 310 | |||||||| |||| || |||| ||| | || |||||||| ||||| |||||||| ||| Sbjct 59 AAGAAGATGATAAAC-TGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCC 117 Query 311 CTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAAT 370 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 118 CTTCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAAC 177 Query 371 TACTTGAGACCCGACATCAAGCGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTG 430 || |||||||| ||||| |||||||| | ||||||| |||| || ||| |||| ||| || Sbjct 178 TATTTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTG 237 Query 431 AACCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCAAATCAGTTACCAGGGA-G 489 ||||||||| | ||||| || ||||||||||||| |||||||| || ||||| || | | Sbjct 238 AACCTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGG-ACG 296 Query 490 AACAGACAACGAGATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGAT 549 ||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 297 AACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGAT 356 Query 550 GGGTTTTGACCCAATGACTCATC-GTCCAAGAACCGAT-AT--CTTCTCTGGCTTATCTC 605 |||||||||||| ||||| |||| | |||||||||||| || |||||| | ||||||| Sbjct 357 GGGTTTTGACCCCATGACCCATCAG-CCAAGAACCGATGATATCTTCTCAAGTTTATCTC 415 Query 606 AGCTCATGTCTTTGTCTTCTAACCTGAGAGG-CTTTGTTGATCTGCAGCAACAGTTTCCG 664 ||||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||| Sbjct 416 AGCTCATGTCTCTGTCT---AACCTAAGAGGACTT-GTTGATCTGCAGCAACAGTTTCCA 471 Query 665 ATTGATCAAGAACACA-CTATACTCAAACTCCAAACCGAGATGGCCAAACTTCAATTGTT 723 || || | || || | | |||| || |||||||| |||||||| || || |||||||| Sbjct 472 ATGGA--A-GACCA-AGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTT 527 Query 724 TCAATACCTTCTTCAACCATCT 745 ||||||||||||||||| ||| Sbjct 528 CCAATACCTTCTTCAACCTTCT 549 > AT5G10278.1 | Symbols: | other RNA | chr5:3228286-3232723 FORWARD LENGTH=991 Length=991 Score = 244 bits (132), Expect = 1e-63 Identities = 148/155 (95%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 1 GGAAAGAGGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GGAAAGAAGCACGTGGTGAATGGACATGAAGAGAAAAGGATGCTAGGTTTAATATAAATT 896 Query 61 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGA-GG---CAAGTAACCAAATCTCAGA 116 ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct 897 GGAATAAGAAGCAGTTAGTGGTTGTGAAGGAAGGAAGGAGGCAAGCAACCAAATCTCAGA 956 Query 117 GACAATTATAACAGTATAGAGAAGGAAGGAAGAAA 151 |||||||||||||||||||||||||||| |||||| Sbjct 957 GACAATTATAACAGTATAGAGAAGGAAGAAAGAAA 991 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69577955370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5