BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487858
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10300.1 | Symbols: ATMES5, MES5, HNL | methyl esterase 5 | ... 1336 0.0
> AT5G10300.1 | Symbols: ATMES5, MES5, HNL | methyl esterase 5
| chr5:3239617-3240870 FORWARD LENGTH=990
Length=990
Score = 1336 bits (723), Expect = 0.0
Identities = 799/837 (95%), Gaps = 0/837 (0%)
Strand=Plus/Plus
Query 1 AAGAACCTTAACCAAAAAGAAAACGTCTACCGAGACTTATGGAGAGGAAACATCACTTCG 60
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 30 AAGAACCTTAACCAAAAAGAAAACGTCTACGGAGACATATGGAGAGGAAACATCACTTCG 89
Query 61 TGTTAGTTCACAACGCTTATCATGGAGCCTGGATCTGGTACAAGCTCAAGCCCCTCCTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 TGTTAGTTCACAACGCTTATCATGGAGCCTGGATCTGGTACAAGCTCAAGCCCCTCCTTG 149
Query 121 AGTCCGCCGGCCACCGCGTTACTGCTGTCGAACTCGCCGCCTCCGGGATCGATCCACGAC 180
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 150 AATCAGCCGGCCACCGCGTTACTGCTGTCGAACTCGCCGCCTCCGGGATCGACCCACGAC 209
Query 181 CAATCCAGGCCGTTGGAACCGTCGACGAATACTCCAAACCGTTGATCGAAACCCTCAAAT 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CAATCCAGGCCGTTGAAACCGTCGACGAATACTCCAAACCGTTGATCGAAACCCTCAAAT 269
Query 241 CTCTTCCAGAGAACGAACAGGTGATTCTCGTTGGATCCAGCTTCGGAGGCATCAACATTG 300
||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||| |
Sbjct 270 CTCTTCCAGAGAACGAAGAGGTAATTCTGGTTGGATTCAGCTTCGGAGGCATCAACATCG 329
Query 301 CTCTCGCCGCCGACATATTCCCGGCGAAGATTAAGGTTCTTGTGTTCCTCAACGCCTTCT 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CTCTCGCCGCCGACATATTTCCGGCGAAGATTAAGGTTCTTGTGTTCCTCAACGCCTTCT 389
Query 361 TGCCCGACACAACCCATGTGCCTTCTCATGTTCTTGACAAGTATATGGAGATGCCCGGAG 420
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 390 TGCCCGACACAACCCACGTGCCTTCTCACGTTCTGGACAAGTATATGGAGATGCCTGGAG 449
Query 421 GGTTGGGAGATTGTGAATTTTCATCTCACGAAACAAGAAATGGGACAATGAGTTTATTGA 480
| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 450 GTTTGGGAGATTGTGAGTTTTCATCTCATGAAACAAGAAATGGGACGATGAGTTTATTGA 509
Query 481 AGATGGGACCAAAATTCATGAAGGCTCGTCTTTACCAAAATTGTCCCATCGAGGATTACG 540
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 510 AGATGGGACCAAAATTCATGAAGGCACGTCTTTACCAAAATTGTCCCATAGAGGATTACG 569
Query 541 AGCTGGCAAAGATGTTGCATAGGCAAGGGTCATTTTTCACAGAGGATCTATCAAAGAAAG 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AGCTGGCAAAAATGTTGCATAGGCAAGGGTCATTTTTCACAGAGGATCTATCAAAGAAAG 629
Query 601 AAAAGTTTAGCGAGGAAGGGTATGGTTCAGTGCAACGAGTTTACATAATGAGTAGTGAAG 660
||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 630 AAAAGTTTAGCGAGGAAGGATATGGTTCGGTGCAACGAGTTTACGTAATGAGTAGTGAAG 689
Query 661 ATAAAGCCATTCCCTGCAATTTCATTCGTTGGATGATCGACAATTTCAACGTCTCAAAAG 720
| |||||||| |||||| ||||||||||||||||||| || |||||||||||||| ||||
Sbjct 690 ACAAAGCCATCCCCTGCGATTTCATTCGTTGGATGATTGATAATTTCAACGTCTCGAAAG 749
Query 721 TCTACGAGATCGACGGTGGAGATCACATGGTGATGCTCTCCAAACCCCAACAACTCTTTG 780
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 750 TCTACGAGATCGATGGCGGAGATCACATGGTGATGCTCTCCAAACCCCAAAAACTCTTTG 809
Query 781 ACTCTCTCTCTGCTATTGCCGCCGATTATATGTAATAAACTAAAGTCCGTTTTACTT 837
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 810 ACTCTCTCTCTGCTATTGCCACCGATTATATGTAATAATCTTAAGTCCGTTTTACTT 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5