BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487859

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   852    0.0  


> AT5G10310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant 
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G13898.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants 
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:3241518-3242266 REVERSE LENGTH=656
Length=656

 Score =  852 bits (461),  Expect = 0.0
 Identities = 566/613 (92%), Gaps = 21/613 (3%)
 Strand=Plus/Plus

Query  1    TCTCTCTCTCTGTTTTTCTTTTTCAAACAAAATCTTGAAATTTCAATAGACCCACATGAA  60
            ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  39   TCTCTCTCTCTGTTTTTCTTTTTCAAACAAAATATTGAAATTTCACTAGACCCACATGAA  98

Query  61   GCTCCTCCTCTATAGTAGTAATTCTTGAATCAAACTC-AAAATGTTAGCTATTTACAAAT  119
            ||||||||| ||||||||||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct  99   GCTCCTCCTTTATAGTAGTAATTCTTGAATCCAACTCAAAAATGTTTGCTATATACAAAT  158

Query  120  CAA-----C--C--CTT-CT-TC-TTCTCATTGTTCTCATCACTCCACATGTCTCATCCT  167
            |||     |  |  ||| || || |||||||| |||||||||||||||| ||||||||||
Sbjct  159  CAACCCTTCTTCTTCTTCCTCTCATTCTCATTCTTCTCATCACTCCACAAGTCTCATCCT  218

Query  168  TTCTTCAACCTGTCCAACCTCCGAATTCCCCTCAAGTGGCTTTGATTGAAGATAAAGCAA  227
            ||||||||||| |||||||||| | ||| |||||||| ||||||||||||||||||||||
Sbjct  219  TTCTTCAACCTATCCAACCTCCTATTTCTCCTCAAGTCGCTTTGATTGAAGATAAAGCAA  278

Query  228  GATTAGGTTCTACACCACCAAGCTGCCACAACAGATGCAACAACTGCCATCCTTGCATGG  287
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GATTAGGTTCAACACCACCAAGCTGCCACAACAGATGCAACAACTGCCATCCTTGCATGG  338

Query  288  CTATTCAAGTACCAACTCTCCCGACTCGCTCCCGGTTCACACGAGTTAACCCGTTTTCCG  347
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  339  CTATTCAAGTACCAACTCTCCCGACTCGCTCCCGCTTCACACGAGTTAACCCGTTTTCCG  398

Query  348  GTGGTTTCGTACGACCTCCTTCTTCTCTAACCACCGTTCTTGATCAGTACTCTAATTACA  407
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  GTGGATTCGTACGACCTCCTTCTTCTCTAACCACCGTTCTTGATCAGTACTCTAATTACA  458

Query  408  AACCTATGGGATGGAAATGTCATTGCAATGGCCACTTTTATAATCCTTAATTCATGGTTT  467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  459  AACCTATGGGATGGAAATGTCATTGCAATGGCCACTTTTATAATCCTTAATTCATGGTTT  518

Query  468  GATCTCTCT-CTTTGttttttttttATTTA-A-GTTTCTAAAAATATTGATTTTTGTGGG  524
            |||||| || || |||| |||||| ||||| | |||||| |||  ||| |||||||||||
Sbjct  519  GATCTC-CTACTCTGTTATTTTTT-ATTTATAAGTTTCTGAAAC-ATTAATTTTTGTGGG  575

Query  525  AGCAGAGGTGTTCTTTGGATTCTTTGTAAATGTACGGCTCAATTTGTGTAAATAATCAAA  584
            || |||  |||||||||||||||||||| ||||||||||||||||||  |||||||||||
Sbjct  576  AGAAGATTTGTTCTTTGGATTCTTTGTATATGTACGGCTCAATTTGT--AAATAATCAAA  633

Query  585  AAGTTCCATGATT  597
            |||||| ||||||
Sbjct  634  AAGTTCTATGATT  646



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28733932084


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5