BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487861
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10320.1 | Symbols: | unknown protein; Has 54 Blast hits to... 1472 0.0
> AT5G10320.1 | Symbols: | unknown protein; Has 54 Blast hits
to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa
- 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:3243956-3246720 REVERSE
LENGTH=1553
Length=1553
Score = 1472 bits (797), Expect = 0.0
Identities = 917/974 (94%), Gaps = 12/974 (1%)
Strand=Plus/Plus
Query 29 GAATCGTTTTTGTGAGAAAATATGTT--AAGAGTTTCATTATTTGAAAATGGAAGAGCTA 86
||||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||
Sbjct 71 GAATCGTTTTTGTGACAAAATCTGTTAAAAGAGTTTCATTATTT-TTGATGGAAGAGCTA 129
Query 87 AAGAGACTGGAGAAGTTTCAGAGTGTTGTATCATCCGTTACTTGTCACGGTTTActttct 146
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |
Sbjct 130 AAGAGACTGGAGAAGTTTCAGACTGTTGTATCATCCATTACTTGTCACGGTTTAC--T-T 186
Query 147 tcttcttcaacctccgattcagcttcttcttctcgcttcctctccaatctcgtccttttc 206
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 TCTTCTTCATCTTCCGATTCAGCTTCTTCTTCTCGCTTCCTCTCCAATCTAGTCCTTTTC 246
Query 207 CTGGTACAACCATGCGGCGAACTCGATTCAGAATCGAAACTGGGTCTAGTCTCTGAGTTT 266
|||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 247 CTGGTACAACCATGCGGCGAACTCGATTTAGATTCGAAACTGGGTCTACTCTCTGAGTTC 306
Query 267 TTACCGAAAATCTCAGGACCTTTTCTGGAAAAGATATCGAGGTCACTTGAGCAAGACGAT 326
|||||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||
Sbjct 307 TTACCGAAAATCTCAGGACCCTTCCTGGAAGAGATATCGAGATCACTTGAGCTAGACGAT 366
Query 327 GAAGCTACTACACCAGTTAACACAATTTCAGCAGAGTCTG-C-AAAGAGTTGTGTGAAGA 384
||||||||||||||| |||||||||||||||||||| || | ||| |||||||||||||
Sbjct 367 GAAGCTACTACACCACTTAACACAATTTCAGCAGAG--TGCCAAAATAGTTGTGTGAAGA 424
Query 385 GGAGTGTCATGGACAATGTTGATCCTTTCATGTCACAGAAGCACCAAGAAGTTGTGGCAA 444
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 425 GGAGTGTCATGGACAATGTTGATCCTTACATGTCACAGAAGCACCAAGAAGTTGTGGCAA 484
Query 445 TGGTCGGGCTAGATGCAATGAAAAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 504
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 485 TGGTCGGGCTAGATGCAATGAAGAGAGCAAACTCTACACTTGAGGATTTCTCCAGGTCTT 544
Query 505 ATTTCATGTTCCATCGGTTGGATATTAACGAACCGCAGTCAATATTCAGATATTTACCAG 564
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 545 ATTTCATGTTTCATCGGTTGGATATTAACGAACCGCAATCAATATTCAGATATTTACCTG 604
Query 565 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTTA 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 605 TGCTTTCATTCACAGAGAGTTACATATATCAGATGGATGCTCTTAATGAGAAGATAGTCA 664
Query 625 GTGAATCAGCTCGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 684
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTGAATCAGCTTGTGGATCCCAAGTCATTTATTCAAGTCATGGATGGAATGCTGAATCAC 724
Query 685 GAGTTTTGTTTGAAACTGATCCATTGAAGCCGCTTGGAGATCAGCTTGAACGTGAGGGCC 744
||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 725 GAGTTCTGTTTGAAACTAATCCGTTGAAGCCGCTTGGAGATCTGCTTGAACGTGAGGCCC 784
Query 745 TTTTAACTCAA-AGAATACAACAAGAGTTTCAGTCGGGTGAAGAGTATTGGGCGTTAGAA 803
|||| || || ||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 785 TTTTGAC-AAACAGAGTACAACAAGAGTTTAATTCGGGTGAAGAGTATTGGGCGTTAGAA 843
Query 804 AGAAAGCTATGTCATGCTCTTTCAAACAAAAATAAGCTCTGTCTCGAAGATGTGATGAGA 863
|||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 844 AGAAAGCTTTGTCATGCACTTTCAAACAAAAACAAGATCTGTCTCGAAGATGTGATGAGA 903
Query 864 GCAATTCATTTGAAGTCTTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 923
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GCAATTCATTTGAAGTCCTTTGATTACAGGGTGTTGAATCTTCTACTATACAAGTTGAGA 963
Query 924 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATTTCAGAGTTCCTGGTTGAA 983
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 964 GGAGAAGAGGTGAATGAGTTGCATATGGACTTCTTGTCAATCTCAGAGTTTCTGGTTGAA 1023
Query 984 GTAGCGGATGATCT 997
||||||||||||||
Sbjct 1024 GTAGCGGATGATCT 1037
Score = 743 bits (402), Expect = 0.0
Identities = 473/506 (93%), Gaps = 9/506 (2%)
Strand=Plus/Plus
Query 1042 AGGACGATGTTCTTGAGAACAGTTTCAATGTATTACGTATGTTTGTAGGAATATTCGGCC 1101
|||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1049 AGGATGATGTTCTTGAGAACAATTTCAATGTATTACGTATGTTTGTGGGAATATTCGGCT 1108
Query 1102 CATCAAATGCACCCACTGAACTGGCGAAGCGGATATCAGAAGCTGAAGAGAAGTATGAAG 1161
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1109 CATCGAATGCACCCACTGAACTGGCGAAGCGGATATCGGAAGCTGAAGAGAAGTATGAAG 1168
Query 1162 AGATTATGAAATCTCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1221
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGATTATGAAATCCCTGGATCCACATTTGTCTTCAAATTACCAAAGAAGATGTGAAGAAG 1228
Query 1222 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTTGGAACATGGAACATACCGGCGG 1281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1229 CTACTAAAGAAGGTGGGAAAATTTCTGGTCATTCGCTGGGAACATGGAACATACCGGCGG 1288
Query 1282 TTATCTCCGACGAAGAAGCATACCGAGCTGCT-A----TAAAACCGTGATTTA-GTTAAG 1335
|||||||||||||||||||||||||| ||||| | |||| ||| |||||| || | |
Sbjct 1289 TTATCTCCGACGAAGAAGCATACCGATCTGCTCAACGGTAAA-CCGAGATTTAAGTCATG 1347
Query 1336 GTTGTATACCGGATTAAACCGGGAttttttt-t-GTATCCATGGCCGAGACATGAATAGG 1393
||| ||||||||||||||||||||||||||| | |||||| || |||||||||||||||
Sbjct 1348 GTTATATACCGGATTAAACCGGGATTTTTTTATTGTATCCTTGACCGAGACATGAATAGA 1407
Query 1394 TGTAAGCTTGTGACCAAACATTCTTTGACCGTTTGAAAGGAAAAAATACTTTGAAGACTT 1453
||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||
Sbjct 1408 TGTAAGCTTGTGACCAAACATTCTTCGACCGTATAAAAGGAAAAAATAGTTTGAAGACTT 1467
Query 1454 TGTGACCTATTATGTATCAAAGGAGACAAAAGCCATTGACTATTAGAATTGGATCATGCA 1513
|||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 1468 TGTGACCTATGATGTATCAAAGGAGACAAAAGCCATTGACTCTTATAATTGGATCATGGA 1527
Query 1514 ATAATAATTTCAGTTGTCTTACTGTG 1539
||||||||||||||||||||||||||
Sbjct 1528 ATAATAATTTCAGTTGTCTTACTGTG 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5