BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487863
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-3... 1598 0.0
AT2G34280.1 | Symbols: | F-box and associated interaction doma... 364 8e-100
AT4G01640.1 | Symbols: | F-box associated ubiquitination effec... 331 8e-90
> AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-3255045
FORWARD LENGTH=1338
Length=1338
Score = 1598 bits (865), Expect = 0.0
Identities = 1058/1150 (92%), Gaps = 17/1150 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAGTTGTTACCGCACGATGTGATAGAGTTTCATATTCTGGAGAGGCTTGATGTA 60
|||||||| |||||||| |||||||||||||||| |||||| ||| ||||||||||||
Sbjct 193 ATGGAAGAATTGTTACCACACGATGTGATAGAGTATCATATAATGGTGAGGCTTGATGTG 252
Query 61 AAAACCCTCCTCAAGTTCAAGTCTGTATCTAAGCAATGGATATCTACTATCCAATCCCCT 120
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 253 AAAACCCTCCTCAAGTTCAAGTCTGTATCGAAGCAATGGATGTCTACAATCCAATCCCCT 312
Query 121 TGTTTCCAAGAACGACAGTTGATCCACCATCTTAGCCAATCACCAGGAGATCCACATGTG 180
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 313 AGTTTCCAAGAAAGACAGTTGATCCACCATCTTAGCCAATCATCAGGAGATCCACATGTG 372
Query 181 CTTTTGGTGTCCTTATCTGATCCTTCTGCTCGTCAACAAGAT-C---C---A--AGCTTT 231
|||||||||||||||| |||||||| |||||||||||||||| | | | ||||||
Sbjct 373 CTTTTGGTGTCCTTATATGATCCTTGTGCTCGTCAACAAGATCCAAGCATAAGCAGCTTT 432
Query 232 GAAGCTCTGAGAACGTTGGAGGTGGGGTCATCAT-CAGCTTCTGTTCAGATCCCTACTCC 290
|||||||||||||| || ||||| |||||| | |||||||||||||||||||||||||
Sbjct 433 GAAGCTCTGAGAACTTTTTTGGTGGAGTCATC-TGCAGCTTCTGTTCAGATCCCTACTCC 491
Query 291 TTGGGAGGACAAGTTATACGACGTTTGCAATACTAGCTGTGATGGTTTGATATGCCTC-- 348
||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 492 TTGGGAGGACAAGTTGTACTTCGTTTGCAATACTAGCTGTGATGGTCTGATATGCCTCTT 551
Query 349 TACGATTTCTATGCTTTGCCCAGTATTGTCGTCAATCCTACCACTCGATGGCATCGAACT 408
|| | |||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 552 TA-G-TTTCTATGAACTGCCGAGTATTGTCGTCAATCCCACCACTCGATGGCATCGAACT 609
Query 409 TTCCCTCAATGCAACTATCAACTAGTCGCTGCCGACAAGGGTGAGAGAGACGAGTGCTTT 468
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 TTCCCTAAATGCAACTATCAACTAGTCGCTGCCGACAAGGGTGAGAGACACGAGTGCTTT 669
Query 469 GAAGTCCCATACCCTACTCCTGGATTTGGCAAAGACAAAATCAGCGGCACATACAAGCCA 528
||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 670 AAAGTCGCATGCCCTACTCCTGGATTTGGCAAAGACAAAATCAGTGGCACTTACAAGCCA 729
Query 529 GTTTGGTTGTATAATTCAGCTGAGTTAGGCCTAAACGACAAGGCTACTACTTGTGAAGTT 588
|||||||| |||||||| |||||||||| |||||| |||||| |||||||||||||||||
Sbjct 730 GTTTGGTTATATAATTCCGCTGAGTTAGACCTAAATGACAAGCCTACTACTTGTGAAGTT 789
Query 589 TTTGATTTTGCCACCAACGCTTGGAGATACATTTTCCCTGCTTCCCCTCATCTGATTCTT 648
|| ||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 790 TTCGATTTTGCCACCAACGCTTGGAGGTACGTTTTCCCCGCGTCCCCTCATCTGATTCTT 849
Query 649 CACACCCAATATCCTGTTTATGTAGATGGGTCACTTCATTGGTTCACTGCCTTGTCACAC 708
||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 850 CACACCCAAGATCCTGTTTATGTAGACGGGTCACTTCACTGGTTCACTGCCTTGTCACAC 909
Query 709 GAGGGCGAAACCATGGTTTTGTCTTTGGATCTTCACTCCGAAATTTTCCAAGTCATCTCT 768
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 910 GAGGGCGAAACCATGGTTTTGTCTTTGGATCTTCACTCCGAAACGTTCCAAGTCATCTCT 969
Query 769 AAAGCTCCCTTTCTCAATGTCTCTGATGAATATAAGATCGTCATGTGCAACCTTGATGAT 828
||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||
Sbjct 970 AAAGCTCCCTTTCTCAATGTCTCTGATGAATATTATATCGTCATGTGCAACCTCGGTGAT 1029
Query 829 CGTTTGTGCGTGTCCGAGGAAAAGTGGCCCAACCAAGTCATCTGGTCGTTGGATGATTCA 888
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1030 CGTTTGTGCGTATCCGAGCAAAAGTGGCCCAACCAAGTCATATGGTCGTTGGATGATTCA 1089
Query 889 GACCACAAGACATGGAAGCAAATATATTCCATAGATCTCAATATCACTTCTTCTTTGTTC 948
||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1090 GACCACAAGACATGGAAGCAAATATATTCCATAGACCTCATTATCACCTCTTCTTTGTTC 1149
Query 949 GGGATTACCAGATTCGCATTCACACCACTAGCAGTTTTGGACAAGGACAAGTTATTGTTT 1008
| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1150 TTTAGTGCCATATTCGCATTCACCCCACTAGCAGTTTTGGACAAGGACAAGTTATTGTTT 1209
Query 1009 TATGATCGTGA-ACACGGCAATGCATTCCTAACACATGATCCAGATACCAAATCTTATGA 1067
|||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TATGATAGT-ACACACGGGGATGCATTCCTAACACATGATCCAGATACCAAATCTTATGA 1268
Query 1068 TTTGCCTTACACATCTAAACGCTGGGCAAGAGTTGTTTGTTATTTCCCGAGTTTAATTTC 1127
|||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 1269 TTTGCCTTACACATCTAATCGCTGTGCAACTGTTGTTTGTTATTTCCCGAGTTTAATTTC 1328
Query 1128 TATTTTGTAG 1137
||||||||||
Sbjct 1329 TATTTTGTAG 1338
> AT2G34280.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:14470201-14471837 REVERSE LENGTH=1637
Length=1637
Score = 364 bits (197), Expect = 8e-100
Identities = 416/516 (81%), Gaps = 38/516 (7%)
Strand=Plus/Plus
Query 579 TTGTGAAGTTTTTGATTTTGCCACCAACGCTTGGAGATACATTTTCCCTGC-TTCCCCTC 637
||||||||||||||||||| ||||||| |||||||| | || |||| || | |||||
Sbjct 945 TTGTGAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTTTGTTGTCCCGGCGTCCCCCT- 1003
Query 638 ATCTGATTCTT-CACACCCAATATCCTGTTTATGTAGATGGGTCACTTCATTGGTTCACT 696
| | ||| ||| | | |||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 1004 ACCGGATACTTCCTTA-CCAAGATCCTGTATATGTAGATGGGTCACTTCATTGGCTCACT 1062
Query 697 GCCTTGTCACACGAGGGCGAAACC-ATGGTTTTGTCTTTGGATCTTCACT-CCGAAATTT 754
| || | | | | ||| || ||||||||||| |||||||| | |||||| ||
Sbjct 1063 G-AGGGTGA-A--A---C--CACCAAT-GTTTTGTCTTTCGATCTTCA-TGCCGAAACTT 1111
Query 755 TCCAAGTCATCTCTAAAGCTCCCTTTCT-CAATGTCTCTGA-TGA--ATA-TA-AGA-TC 807
|||||||| | ||||||||||||||||| || | | || | | || || ||| |
Sbjct 1112 TCCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCAC-GACT-ACTCTAGTAGAGAGTT 1169
Query 808 G-TCATGTGCAACCTTGATGATCGTTTGTGCGTGTCCGAGGAAAA-GTGGCCCAACCAAG 865
| ||||||||||||||||||||||||||||||| || || |||| ||||||||||||||
Sbjct 1170 GATCATGTGCAACCTTGATGATCGTTTGTGCGTATCAGAA-AAAATGTGGCCCAACCAAG 1228
Query 866 TCATCTGGTCGTTGGATGATTCAGACCACAAGACATGGAAGCAAATATATTCCATAGATC 925
| || |||||||||||| | |||| ||||||||||||||| ||||||||||||||||||
Sbjct 1229 TGATATGGTCGTTGGAT--T-CAGATCACAAGACATGGAAGGAAATATATTCCATAGATC 1285
Query 926 TCAATATCACTTCTTCTTTGTTCGGGATTACCAGATTCGCATTCACACCACTAGCAGTTT 985
||||||| |||||||||||||| |||| || |||||||| ||| |||||||| |||||
Sbjct 1286 TCAATATAACTTCTTCTTTGTTTGGGAGTAATGGATTCGCACTCAGACCACTAGGAGTTT 1345
Query 986 TGGACAAGGACAAGTTATTGTTTTATGATCGTGAACACGGCAATGCA-TTCCTAACACAT 1044
| ||||| |||||||| ||||||| ||| | |||| |||| || || || |||||||||
Sbjct 1346 TTGACAAAGACAAGTTGTTGTTTTGTGAACCTGAATACGGGGAT-CAATTGCTAACACAT 1404
Query 1045 GATCC-AGATACCAAATCTTATGA-TTTGCCTTACA 1078
||||| | | || ||||||||||| |||| |||||
Sbjct 1405 GATCCCAAA-ACAAAATCTTATGAATTTGA-TTACA 1438
> AT4G01640.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:702563-703600 FORWARD LENGTH=903
Length=903
Score = 331 bits (179), Expect = 8e-90
Identities = 411/515 (80%), Gaps = 48/515 (9%)
Strand=Plus/Plus
Query 579 TTGTGAAGTTTTTGATTTTGCCACCAACGCTTGGAGATACATTTTCCCTGC-TTCCCCTC 637
|||| |||||||||||||| ||||||| |||||||| | || |||| || | |||||
Sbjct 357 TTGTCAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTTTGTTGTCCCGGCGTCCCCCT- 415
Query 638 ATCTGATTCTT-CACACCCAATATCCTGTTTATGTAGATGGGTCACTTCATTGGTTCACT 696
| | ||| ||| | | |||| ||||||| |||||||||||||||||||||| |
Sbjct 416 ACCGGATACTTCCTTA-CCAAGATCCTGTATATGTAGATGGGTCACTTCATT-G------ 467
Query 697 GCCTTGTCACACGAGGGCGAAACCATGGTTTTGTCTTTGGATCTTCACT-CCGAAATTTT 755
| | |||| | | | | || ||||||||||| |||||||| | |||||| |||
Sbjct 468 G-C---TCAC-C-A---C----CAAT-GTTTTGTCTTTCGATCTTCA-TACCGAAACTTT 512
Query 756 CCAAGTCATCTCTAAAGCTCCCTTTCT-CAATGTCTCTGA-TGA--ATA-TA-AGA-TCG 808
||||||| | ||||||||||||||||| || | | || | | || || ||| | |
Sbjct 513 CCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCAC-GACT-ACTCTAGTAGAGAGTTG 570
Query 809 -TCATGTGCAACCTTGATGATCGTTTGTGCGTGTCCGAGGAAAA-GTGGCCCAACCAAGT 866
||||||||||||||||||||||||||||||| || || |||| |||||||||||||||
Sbjct 571 ATCATGTGCAACCTTGATGATCGTTTGTGCGTATCAGAA-AAAATGTGGCCCAACCAAGT 629
Query 867 CATCTGGTCGTTGGATGATTCAGACCACAAGACATGGAAGCAAATATATTCCATAGATCT 926
|| |||||||||||| | |||| ||||||||||||||| |||||||||||||||||||
Sbjct 630 GATATGGTCGTTGGAT--T-CAGATCACAAGACATGGAAGGAAATATATTCCATAGATCT 686
Query 927 CAATATCACTTCTTCTTTGTTCGGGATTACCAGATTCGCATTCACACCACTAGCAGTTTT 986
|||||| |||||||||||||| |||| || |||||||| ||| |||||||||||||||
Sbjct 687 CAATATAACTTCTTCTTTGTTTGGGAGTAATGGATTCGCACTCAGACCACTAGCAGTTTT 746
Query 987 GGACAAGGACAAGTTATTGTTTTATGATCGTGAACACGGCAATGCA-TTCCTAACACATG 1045
||||| |||||||||||||||| ||| | |||| |||| || || || ||||||||||
Sbjct 747 TGACAAAGACAAGTTATTGTTTTGTGAACCTGAATACGGGGAT-CAATTGCTAACACATG 805
Query 1046 ATCC-AGATACCAAATCTTATGA-TTTGCCTTACA 1078
|||| | | || ||||||||||| |||| |||||
Sbjct 806 ATCCCAAA-ACAAAATCTTATGAATTTGA-TTACA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5