BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487866
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e |... 1602 0.0
AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr... 828 0.0
> AT5G10360.1 | Symbols: EMB3010, RPS6B | Ribosomal protein S6e
| chr5:3258474-3260234 REVERSE LENGTH=1102
Length=1102
Score = 1602 bits (867), Expect = 0.0
Identities = 949/989 (96%), Gaps = 4/989 (0%)
Strand=Plus/Plus
Query 1 AGCTAAGCCGCGCCGAGAGCATTTTATATCTTCAATCTTCTGT-CGCAGGCTGTTGTAGC 59
|||| ||||||| |||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 14 AGCTGAGCCGCGTCGAGAGCATTTTATATCTTCAATCATCT-TACGCAGGCTGTTGTAGC 72
Query 60 AGCAGTGTCTATCGGAGACGATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAA 119
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 73 AGCAGTGTCTATCGGAGACGATGAAGTTCAACGTCGCCAATCCGACCACCGGGTGTCAAA 132
Query 120 AGAAGCTCGAGATCGATGACGACCAAAAACTCCGTGCCTTTTTCGACAAGAGGCTCTCTC 179
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 133 AGAAACTCGAGATCGATGACGATCAAAAACTCCGCGCCTTTTTCGACAAGAGGCTCTCTC 192
Query 180 AGGAAGTTAGCGGAGATGCTTTGGGCGAGGAATTCAAGGGTTACGTATTCAAGATCATGG 239
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 193 AGGAAGTTAGCGGAGATGCTCTAGGCGAGGAATTCAAGGGATACGTATTCAAGATCATGG 252
Query 240 GAGGTTGTGACAAGCAAGGTTTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCC 299
|||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 253 GAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCC 312
Query 300 GCCTTTTGCTTCACAGAGGTACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGA 359
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 313 GTCTTTTGCTTCACCGAGGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGA 372
Query 360 GGAGACGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGACCTCTCTGTCCTTAACTTGG 419
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 373 GGAGACGAAAGTCTGTCCGTGGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTTGG 432
Query 420 TCATTGTGAAGAAGGGTG-AGAGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGA 478
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCATTGTGAAGAAGGGTGTA-AGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGA 491
Query 479 ATGAGAGGTCCCAAGAGGGCATCAAAGATCCGCAAGTTGTTTAACCTTGGAAAGGAGGAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 492 ATGAGAGGTCCCAAGAGGGCATCAAAGATCCGCAAGTTGTTTAACCTTGGAAAAGAGGAT 551
Query 539 GATGTGAGGAAGTATGTCAACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAG 598
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GATGTGAGGAAGTACGTTAACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAAGAAG 611
Query 599 GTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACTCTCCAGAGGAAGAGA 658
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 612 GTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGA 671
Query 659 GCTAGAATTGCTGACAAGAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCCGAGTAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 672 GCTAGAATTGCTGACAAGAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCTGATTAC 731
Query 719 CAGAAGCTTCTTGCCTCCAGACTTAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCC 778
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 732 CAGAAGCTTCTTGCCTCCAGACTAAAGGAGCAGCGTGATCGCCGTAGTGAAAGTTTGGCC 791
Query 779 AAGAAGAGGTCTAGACTCTCTTCTGCTCCTGCCAAACCCGTTGCTGCTTAAACTGCCCCA 838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 792 AAGAAGAGGTCTAGACTCTCTTCTGCTCCTGCTAAACCCGTTGCTGCTTAAACTGCCTCA 851
Query 839 AGATTAAGAGATTTCTTTCTCTCTAGTTTGTTTCTGGTCGTATTTAAGTTGCTCCACAGA 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AGATTAAGAAATTTCTTTCTCTCTAGTTTGTTTCTGGTCGTATTTAAGTTGCTCCACAGA 911
Query 899 CATGATAACGCCATTTTGAATGCTATTTTTGGTTTCTGCTTTGTGTCAACTTTTCAAGCC 958
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 912 CATGAGAACGCCATTTTGAACACTATTTTTGGTTTCTGTTTTGTGTCAACTTTTCAAGCC 971
Query 959 TTTTATTATATCAAAGTTTTGAACCTCTT 987
|||||||||||||||||||||||||||||
Sbjct 972 TTTTATTATATCAAAGTTTTGAACCTCTT 1000
> AT4G31700.1 | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4:15346072-15347727
REVERSE LENGTH=1000
Length=1000
Score = 828 bits (448), Expect = 0.0
Identities = 647/744 (87%), Gaps = 10/744 (1%)
Strand=Plus/Plus
Query 79 GATGAAGTTCAACATCGCCAACCCGACCACCGGGTGCCAAAAGAAGCTCGAGATCGATGA 138
||||||||||||| | || || || || || || ||||| ||||||||||||||||| ||
Sbjct 13 GATGAAGTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGA 72
Query 139 CGACCAAAAACTCCGTGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGC 198
||||| ||||| ||||| |||| ||||||||| ||||||| ||||| || ||||||||
Sbjct 73 TGACCAGAAACTACGTGCGTTTTACGACAAGAGAATCTCTCAAGAAGTCAGTGGAGATGC 132
Query 199 TTTGGGCGAGGAATTCAAGGGTTACGTATTCAAGATCATGGGAGGTTGTGACAAGCAAGG 258
|||||||||||| ||||| || ||||| |||||||||| ||| ||||| || ||||||||
Sbjct 133 TTTGGGCGAGGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGG 192
Query 259 TTTCCCAATGAAACAGGGAGTTCTGACTCCTGGGCGTGTCCGCCTTTTGCTTCACAGAGG 318
|||||||||||| ||||||||| ||||||| || ||||| ||||||||||||||| ||||
Sbjct 193 TTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGG 252
Query 319 TACTCCTTGTTTCAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTTCG 378
|||||||| ||||||||||| |||||||| ||||| ||||||||| |||||||||||||
Sbjct 253 AACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCG 312
Query 379 TGGTTGCATTGTGAGCCCTGACCTCTCTGTCCTTAA-CTTGGTCATTGTGAAGAAGGGTG 437
||||||||||||||||||||| |||||||| || || ||| |||||||||||||||||||
Sbjct 313 TGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCTT-GTCATTGTGAAGAAGGGTG 371
Query 438 AGAGTGATCTTCCCGGGCTTACCGACACTGAGAAGCCAAGAATGAGAGGTCCCAAGAGGG 497
||| |||||||| ||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct 372 AGAACGATCTTCCTGGGCTTACCGATACTGAGAAGCCAAGAATGAGAGGACCAAAGAGAG 431
Query 498 CATCAAAGATCCGCAAGTTGTTTAACCTTGGA-AAGGAGGATGATGTGAGGAAGTATGTC 556
| || |||||||| || ||||||||| | | ||||| |||||||| |||| ||||||
Sbjct 432 CCTCCAAGATCCGTAAACTGTTTAACC-TCAAGAAGGAAGATGATGTCAGGACCTATGTC 490
Query 557 AACACTTACCGCCGTACCTTCACAAACAAGAAGGGCAA-GAAGGTTAGCAAGGCTCCTAA 615
|||||||||||||| | |||||||||||||||||||| ||| |||||||| || |||||
Sbjct 491 AACACTTACCGCCGCAAGTTCACAAACAAGAAGGGCAAGGAA-GTTAGCAAAGCCCCTAA 549
Query 616 GATCCAGAGGCTTGTGACTCCATTGACTCTCCAGAGGAAGAGAGCTAGAATTGCTGACAA 675
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 550 GATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAA 609
Query 676 GAAGAAGAGAATCGCCAAGGCTAACTCTGATGCAGCCGAGTACCAGAAGCTTCTTGCCTC 735
|||||||| ||| || |||||||| |||||||| || || |||||||||||||| |||||
Sbjct 610 GAAGAAGAAAATTGCTAAGGCTAATTCTGATGCTGCTGATTACCAGAAGCTTCTCGCCTC 669
Query 736 CAGACTT-AAGGAGCAGCGTGATC-GCCGTAGTGAAAGTTTGGCCAAGAAGAGGTCTAGA 793
|| || ||||| |||||||| | | | ||||| |||||||| ||||||||||| |||
Sbjct 670 GAGG-TTGAAGGAACAGCGTGA-CAGGAGGAGTGAGAGTTTGGCAAAGAAGAGGTCGAGA 727
Query 794 CTCTCTTCTGCTCCTGCCAAACCC 817
|||||||||||| ||||||| |||
Sbjct 728 CTCTCTTCTGCTGCTGCCAAGCCC 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5