BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487869
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:32... 704 0.0
AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10... 523 6e-148
AT5G65350.1 | Symbols: HTR11 | histone 3 11 | chr5:26119211-261... 416 1e-115
AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:29... 370 8e-102
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 348 4e-95
> AT5G10400.1 | Symbols: | Histone superfamily protein | chr5:3270289-3270952
REVERSE LENGTH=664
Length=664
Score = 704 bits (381), Expect = 0.0
Identities = 437/465 (94%), Gaps = 0/465 (0%)
Strand=Plus/Plus
Query 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 62 AAAATGGCTCGTACCAAGCAAACAGCTCGTAAATCCACCGGAGGAAAGGCACCAAGGAAG 121
Query 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 122 CAACTCGCGACCAAAGCTGCGAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 181
Query 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGAGAGAAATCAGGAAGTATCAAAAGAGTACT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 182 CACAGATTCCGTCCAGGAACGGTGGCGTTGAGAGAAATCAGGAAGTATCAGAAGAGTACT 241
Query 181 GAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTTC 301
Query 241 AAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGCT 300
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 302 AAGACGGATCTGAGGTTCCAGAGCAGTGCCGTCGCAGCTCTTCAGGAAGCAGCTGAGGCT 361
Query 301 TATCTTGTTGGGCTTTTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTAACC 360
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct 362 TATCTTGTTGGGCTCTTTGAAGATACTAATCTCTGTGCGATTCATGCTAAGAGGGTTACG 421
Query 361 ATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGAGAGGGCTTAAGACAAC 420
|| ||||||||||| || |||||||||||||| |||||||||||||||||||||| |||
Sbjct 422 ATTATGCCTAAGGATATCCAGCTTGCGAGGAGAATCAGAGGAGAGAGGGCTTAAGTGAAC 481
Query 421 GATgaagaagaagaagaagaagaaTAGTCGTTTAGTTATGGATTA 465
|| || || ||||| ||||||| |||||||||||||||||||||
Sbjct 482 GAAGATGATGAAGATTAAGAAGACTAGTCGTTTAGTTATGGATTA 526
> AT3G27360.1 | Symbols: | Histone superfamily protein | chr3:10129105-10129937
REVERSE LENGTH=833
Length=833
Score = 523 bits (283), Expect = 6e-148
Identities = 397/452 (88%), Gaps = 7/452 (2%)
Strand=Plus/Plus
Query 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
||||||||| | || |||||||||||| | ||||||||||||||||| ||||| || |||
Sbjct 66 AAAATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAG 125
Query 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 126 CAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 185
Query 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGA-GAGAAATCAGGAAGTATCAAAAGAGTAC 179
|||||||||||||||||||| || ||||| | | |||||||| ||||||||||| || ||
Sbjct 186 CACAGATTCCGTCCAGGAACAGTAGCGTT-ACGTGAAATCAGAAAGTATCAAAAAAGCAC 244
Query 180 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 239
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 245 AGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTT 304
Query 240 CAAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGC 299
|||||||||||| ||||| ||||| ||||| || || |||||||| ||||||||||| ||
Sbjct 305 CAAGACGGATCTTAGGTTTCAGAGTAGTGCAGTCGCAGCTCTTCAAGAAGCAGCTGAAGC 364
Query 300 TTATCTTG-TTGGGCTT-TTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTA 357
|||| ||| |||| || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 365 TTAT-TTGGTTGGA-TTGTTTGAAGATACTAATCTTTGTGCTATTCATGCTAAGAGGGTT 422
Query 358 ACCATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGAGAGGGCTTAAGAC 417
|| || ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 423 ACGATTATGCCTAAGGATATTCAACTTGCGAGGAGGATTAGAGGTGAGAGGGCTTAAGAT 482
Query 418 AACGATgaagaagaagaagaagaagaaTAGTC 449
|| ||||| ||||||||| || ||| |||
Sbjct 483 TT-GAAGAAGATGAAGAAGAAAAACAATGGTC 513
> AT5G65350.1 | Symbols: HTR11 | histone 3 11 | chr5:26119211-26119825
REVERSE LENGTH=615
Length=615
Score = 416 bits (225), Expect = 1e-115
Identities = 352/413 (85%), Gaps = 10/413 (2%)
Strand=Plus/Plus
Query 4 ATGGCTCGTACCAAGCAAACAGCTCGCAA-ATCCACCGGAGGAAAGGCTCCAAGGAAGCA 62
||||||||||||||||| || ||| | || ||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGCTCGTACCAAGCAGACTGCTAG-AATATCCACCGGAGGAAAAGCTCCGAGGAAGCA 59
Query 63 ACTCGCGACTAAAGCAGCGAGGA-AATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCAC 121
| | ||| | ||||| |||| || |||| || |||||||| |||||||||||||||||||
Sbjct 60 ATTAGCGCCAAAAGCGGCGA-GACAATCTGCACCAGCAACGGGAGGAGTGAAGAAGCCAC 118
Query 122 ACAGATTCCGTCCAGGAACTGTGGCGTTGAGAGAAATCAGGAAGTATCAAAAGAGTACTG 181
|||||||||||||||||||||| ||||||||||| || ||||| || ||||||||||| |
Sbjct 119 ACAGATTCCGTCCAGGAACTGTTGCGTTGAGAGATATTAGGAAATACCAAAAGAGTACCG 178
Query 182 AGCTTTTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTCGTGAGATTGCTCAAGATTTC 240
|| |||||||| | ||||||||||| ||| || ||| |||||||||| ||||||||||||
Sbjct 179 AGATTTTGATCAGAAAGCTTCCGTTTCAGCGACTTG-TTCGTGAGATCGCTCAAGATTTC 237
Query 241 AAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGCT 300
|| |||||||||||||| ||||||||||| || || ||||| |||||||| |||||||||
Sbjct 238 AAAACGGATCTGAGGTTTCAGAGCAGTGCCGTCGCTGCTCTCCAGGAAGCTGCTGAGGCT 297
Query 301 TATCTTGTTGGGCTTTTT-GAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTAAC 359
|| ||||||||| || || || ||||| || || ||||||||||| || ||||| || ||
Sbjct 298 TACCTTGTTGGG-TTATTCGAAGATACAAACCTCTGTGCGATTCACGCAAAGAGGGTGAC 356
Query 360 CATCATGCCTAAGGACATTCAGCTT-GCGAGGAGGATCAGAGGAGAGAGGGCT 411
||||||||||| || || || || ||||| ||||| ||||| ||||| |||
Sbjct 357 GATCATGCCTAAAGAGATCCAA-TTAGCGAGAAGGATTAGAGGTGAGAGAGCT 408
> AT1G09200.1 | Symbols: | Histone superfamily protein | chr1:2971593-2972199
REVERSE LENGTH=607
Length=607
Score = 370 bits (200), Expect = 8e-102
Identities = 337/404 (83%), Gaps = 6/404 (1%)
Strand=Plus/Plus
Query 4 ATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAGCAA 63
||||||||||||||||| || ||| | ||||| ||||||||||||||||||||||||||
Sbjct 68 ATGGCTCGTACCAAGCAGACGGCTAGGAAATCAACCGGAGGAAAGGCTCCAAGGAAGCAG 127
Query 64 CTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCACAC 123
|| ||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 128 CTGGCGACAAAAGCGGCGAGGAAATCTGCTCCGGCCACCGGAGGAGTGAAGAAGCCACAC 187
Query 124 AGATTCCGTCCAGGAACTGTGGCGTTGAGAGAAATCAGGAAGTATCAAAAGAGTACTGAG 183
|||||| | || |||||||| || || ||||||||||||||||| || ||||| ||||||
Sbjct 188 AGATTCAGACCCGGAACTGTTGCTTTAAGAGAAATCAGGAAGTACCAGAAGAGCACTGAG 247
Query 184 CTT-TTGATCCGTAAGCTTCCGTTCCAGAGA-TTGGTTC-GTGAGATTGCTCAAGATTTC 240
||| || |||||||| || || |||||||| ||| | | | ||||| ||||| || |||
Sbjct 248 CTTCTT-ATCCGTAAACTCCCTTTCCAGAGGCTTG-T-CAGAGAGATCGCTCAGGACTTC 304
Query 241 AAGACGGATCTGAGGTTCCAGAGCAGTGCTGTGGCGGCTCTTCAGGAAGCAGCTGAGGCT 300
|| || ||||| | |||||||||||||| || || |||||||||||||| ||||| |||
Sbjct 305 AAAACCGATCTTCGTTTCCAGAGCAGTGCCGTCGCCGCTCTTCAGGAAGCTGCTGAAGCT 364
Query 301 TATCTTGTTGGGCTTTTTGAGGATACTAATCTTTGTGCGATTCATGCTAAGAGAGTAACC 360
|| || || || || || || || || ||||| || || ||||| || ||||| || ||
Sbjct 365 TACCTCGTCGGACTCTTCGAAGACACCAATCTCTGCGCCATTCACGCCAAGAGGGTCACG 424
Query 361 ATCATGCCTAAGGACATTCAGCTTGCGAGGAGGATCAGAGGAGA 404
|||||||| |||||||| ||||| ||||| || |||||||||||
Sbjct 425 ATCATGCCCAAGGACATCCAGCTCGCGAGAAGAATCAGAGGAGA 468
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 348 bits (188), Expect = 4e-95
Identities = 239/264 (91%), Gaps = 2/264 (1%)
Strand=Plus/Plus
Query 1 AAAATGGCTCGTACCAAGCAAACAGCTCGCAAATCCACCGGAGGAAAGGCTCCAAGGAAG 60
||||||||| | || |||||||||||| | ||||||||||||||||| ||||| || |||
Sbjct 2162 AAAATGGCTAGAACAAAGCAAACAGCTAGAAAATCCACCGGAGGAAAAGCTCCTAGAAAG 2221
Query 61 CAACTCGCGACTAAAGCAGCGAGGAAATCAGCTCCAGCAACCGGAGGAGTGAAGAAGCCA 120
||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2222 CAACTGGCGACGAAAGCAGCAAGGAAATCAGCTCCAGCCACCGGAGGAGTGAAGAAGCCA 2281
Query 121 CACAGATTCCGTCCAGGAACTGTGGCGTTGA-GAGAAATCAGGAAGTATCAAAAGAGTAC 179
|||||||||||||||||||| || ||||| | | |||||||| ||||||||||| || ||
Sbjct 2282 CACAGATTCCGTCCAGGAACAGTAGCGTT-ACGTGAAATCAGAAAGTATCAAAAAAGCAC 2340
Query 180 TGAGCTTTTGATCCGTAAGCTTCCGTTCCAGAGATTGGTTCGTGAGATTGCTCAAGATTT 239
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2341 AGAGCTTTTGATCCGTAAGCTTCCTTTCCAGAGATTGGTTCGTGAGATAGCTCAAGATTT 2400
Query 240 CAAGACGGATCTGAGGTTCCAGAG 263
|||||||||||| ||||| |||||
Sbjct 2401 CAAGACGGATCTTAGGTTTCAGAG 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25016605206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5