BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487870
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10410.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1179 0.0
> AT5G10410.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr5:3271915-3273395 FORWARD LENGTH=1367
Length=1367
Score = 1179 bits (638), Expect = 0.0
Identities = 799/878 (91%), Gaps = 6/878 (1%)
Strand=Plus/Plus
Query 1 TAGTTCTATCGAGAGAATGTCAGAACTCAAAACTCGCATAATCGGAAAATTCAAAGACAA 60
|||||| ||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct 22 TAGTTCCATCGAGATAATGCCAGGACTCAAAACTCACATAATCGGAAAATTCAAAGACAA 81
Query 61 AGCTTCGATAGGCAAAGCAAGGTTGGTTCATAGTTTTAGCTCCACTGCTGTCAAATACAT 120
||||||||||||||||||||| |||||||||||||| | ||||| || |||||||||||
Sbjct 82 AGCTTCGATAGGCAAAGCAAGATTGGTTCATAGTTTCGGGTCCACCGCCGTCAAATACAT 141
Query 121 TCACTTAGCGCTCTTGAAATCAACAACTCATACTTCTAACAAACCACCAAACAGTGATTA 180
||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||| ||
Sbjct 142 TCACTTAGCCCTCTTGAAGTCAACAACTCGTACTCCTAACAAACCACCAAACAGTGACTA 201
Query 181 TGTCTCCGATGTCATCTCTTACTCGAACAGCCGTTACGCTCCGGCAGCTTT-TGCGGCGG 239
|||||||| ||| ||||||||||| |||||||||||||||||||| ||||| | | ||||
Sbjct 202 TGTCTCCGCTGTTATCTCTTACTCCAACAGCCGTTACGCTCCGGCGGCTTTCT-CAGCGG 260
Query 240 CTCTGTGGAGATTACGTGTCACGAAAAACGCTATCGTGGCCACCAAATCTCTCATCGTCA 299
|||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 261 CTCTGTGGAGGTTACGTGTCACGAAGAACGCTATTGTGGCCACCAAGTCTCTCATCGTCA 320
Query 300 TCCACAAGCTTATCAAATCATCAAGAGACAAGTTTGAAGGCCTAGATCGTGGTCGAAACA 359
|||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 321 TCCACAAGCTTATCAAATCATCAAGAGACAAGTTTGAAGGACTAGGTCATGGTCGAAACA 380
Query 360 ATCTAAAGTTGAATGAGTTTTCAGACAAATCTTCTACTCTCGCACTAGAATTGTCTCAAT 419
||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||| |
Sbjct 381 ATCTAAAGTTGAACGAGTTTTCAGACAAATCTTCTAATCTCACGCTAGAATTGTCTCAGT 440
Query 420 GGATTAGATGGTATGGACTATATTTGGATCGTCTCTCATGGGTTCCGAAAGTATTAGGAT 479
|||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 441 GGATTAGATGGTATGGACAATACTTGGATCGTCTCTCGTGGGTTCCGAAGGTATTAGGAT 500
Query 480 CTTTTCCAAATTTATTGGAGAACCCGAAAGAGAAAGTCAAAGAAAAAGATCGTGTTTCGT 539
||||||||||||| |||| ||| || ||||| ||||| |||| ||||||||||||||||
Sbjct 501 CTTTTCCAAATTTGTTGGTGAATCCAAAAGATAAAGTTGAAGAGAAAGATCGTGTTTCGT 560
Query 540 CTTACCAAACCGGGTGTATTATGAGACAAACGGATTTTCTTGTGAGtttttttGAGCATA 599
||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 561 CTTACCAAACCGGGTATATTATAAGACAAACGGATTCTCTTGTGAGTTTTTTTGAGCATA 620
Query 600 TATGTACCAGACCGGAGATTCCACCTATGTACGAAAACAAGATCGTGGACGAGATTAGAG 659
||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 621 TATGTACCAGACCTGAGATTCCGCCTATGTTCCAAAACAAGATCGTGGACGAGATTAGAG 680
Query 660 AGCTCGTGATTCAAGACTACTTT-ATGGTTGTGAGATTGGTTATGGTACGGCTTCGAG-T 717
|||| |||||| ||||||| ||| | | ||||||||||||||||||||||||||| || |
Sbjct 681 AGCTAGTGATTGAAGACTA-TTTCAAGATTGTGAGATTGGTTATGGTACGGCTTC-AGGT 738
Query 718 GTTGAGTGAAAGATTGATTAAACCGAATGTTAAGCATATTGGTGATCCCGGTTTGAACGA 777
|||| |||| |||||||||||||| |||||| | ||||||||||| |||| |||||||
Sbjct 739 GTTGTTTGAACGATTGATTAAACCGGGTGTTAAACCTATTGGTGATCTCGGTCTGAACGA 798
Query 778 TTTGAGTCTGGTTTTGGTGAGACTTGAAGAATGCAAAGAGAGTTTGAGTGGAtttttttG 837
||| |||||| ||||||||||||||| ||||||||| ||||| ||||||||||| |||||
Sbjct 799 TTTTAGTCTGCTTTTGGTGAGACTTGTAGAATGCAAGGAGAGCTTGAGTGGATTATTTTG 858
Query 838 GCGTTGCAGACGTCTAGCCGAAGATTTTTGGTGTTTGG 875
|||||||||||||||||| || ||||||||||||||||
Sbjct 859 GCGTTGCAGACGTCTAGCGGATGATTTTTGGTGTTTGG 896
Score = 132 bits (71), Expect = 9e-30
Identities = 107/123 (87%), Gaps = 7/123 (6%)
Strand=Plus/Plus
Query 876 ACAATAAGCAAATGGTTAAATTGGCCGGTTTGGTTCAGACTACGGTTAAAGACGATGAGG 935
|||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 930 ACAATAAGCAGATGATTGAATTGGCCGGTTTGGTTCAGACTACGGTTAAGGACGATGAGG 989
Query 936 AGATGGTTGAAATATTGGCCGGTTC-GTCTCCGA-CCGAATGGGTAACATTCGACGACTC 993
||||| ||| | ||||| ||||| || | | | |||||||||||||||||||||| ||
Sbjct 990 AGATGATTG--A-ATTGGTTGGTTCGGT-T-CAACCCGAATGGGTAACATTCGACGATTC 1044
Query 994 TGA 996
|||
Sbjct 1045 TGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5