BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487872
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280516-328... 1408 0.0
AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141470-26... 442 3e-123
> AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280516-3282411
REVERSE LENGTH=1061
Length=1061
Score = 1408 bits (762), Expect = 0.0
Identities = 907/974 (93%), Gaps = 22/974 (2%)
Strand=Plus/Plus
Query 1 TTCCTCCAAATCCTGTAACAGTAAAATTTGTATAGATCG-AA-AAAGCTACAATTTTTGT 58
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1 TTCCTCCAAATCCTGTAACAGTAAAATTTGTATAGATCGAAAGAAAGCTACAATTTTTGA 60
Query 59 CGCTCTATAATGGCTGAATTCATGGAACCAAATCTCGTATCCAATTTCGATGATGCA-AA 117
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | ||
Sbjct 61 CGCTCTATAATGGCTGAATTTATGGAACCAAATCTTGTATCCAATTTTGATGATG-AGAA 119
Query 118 GAACAACTT-TGTCGACACAACATCGATTTTTCAGATGGGTTTTCCTCTGGAGAGCGAAG 176
|| ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGCAA-TTCTGTCGACACAAGATCGATTTTTCAGATGGGTTTTCCTCTGGAGAGCGAAG 178
Query 177 AGATCGTTAGAGAGATGATT-ATGAAAGAGAGACAACATTCACCGAGAGATGATTACCTC 235
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 179 AGATCGTTAGAGAGATGATTGA-GAAAGAGAGACAACACTCACCGAGAGATGATTACCTC 237
Query 236 AAGAGACTGAGAAATGGAGATTTGGATTTCAATGTCAGAAAT-CAAGCCCTTGATTGGAT 294
|||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||
Sbjct 238 AAGAGACTGAGAAACGGAGATTTGGATTTCAATGTCAG-AATCCAAGCCCTTGGTTGGAT 296
Query 295 TTGGAAGGTCTGTGAGGAACTTCAATTTGGACCATTGTGTATATGTCTAGCAATGAACTA 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGGAAGGCCTGTGAGGAACTTCAATTTGGACCATTGTGTATATGTCTAGCAATGAACTA 356
Query 355 CTTGGATCGTTTCTTATCTGTTCATGACTTGCCTAATGGAAAAGCTTGGACTGTGCAATT 414
|||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||
Sbjct 357 CTTGGATCGTTTCTTATCTGTTCATGACTTACCTAGTGGAAAAGCTTGGACTGTACAATT 416
Query 415 GTTGGCTGTAGCTTGTTTATCATTGGCAGCTAAGATAGAGGAAACTAATGTTCCAGAGTT 474
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 GTTGGCTGTTGCTTGTTTATCATTGGCAGCTAAAATAGAGGAAACTAATGTTCCAGAGTT 476
Query 475 AATACATCTGCAGGTTGGAGATCCCTTGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGAT 534
||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 477 AATGCAGCTGCAGGTTGGAGCTCCCATGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGAT 536
Query 535 GGAACATTTAGTGTTGAACGTATTGAGATGGAGGTTACGAGCAGTGACACCGTGCTCTTA 594
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 GGAACTTTTGGTGTTGAACGTATTGAGATGGAGGTTACGGGCAGTGACACCGTGCTCTTA 596
Query 595 CGTTAGATACTTCCTGTGTAAGATCAATGGTTATGATCAAGAACCACACAGCAGATTGAT 654
|||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 597 CGTTAGATACTTCCTGAGTAAGATCAATGGCTATGATCAAGAACCACATAGCAGATTGGT 656
Query 655 ATCTAGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAG 714
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AACTAGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAG 716
Query 715 AGCTTCAGAGATTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAACACTTTGACAAATT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCTTCAGAGATTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAACACTTTGACAAATT 776
Query 775 CTCCTTCTTCT-CACACCTTGAAAAGG-TAAGAAA-GGAGAGAATGAAGAAGATTGGTGA 831
|||||||| || | |||| ||| | |||| ||||||| ||||||||||||||||
Sbjct 777 CTCCTTCT-CTTCTT-CCTTCTCAAGCCTT-GAAAAGGAGAGAGTGAAGAAGATTGGTGA 833
Query 832 AATGATAGAGAGAGATGGATCAAGTTCAAGTTCACAAACACCCAAGAATATGGTCTTGCA 891
||||||||||||||| |||||||||||||||||||||||||| || |||| ||||| ||
Sbjct 834 AATGATAGAGAGAGACGGATCAAGTTCAAGTTCACAAACACCAAATAATACAGTCTTACA 893
Query 892 ATATAATACTCATCG-----CT-ATTCTCTTTCTACTGCTTCTGTTTCCTCCTCCCTCAC 945
|| ||| | || ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 894 ATTTAAGAGTCGTCGTTATTCTCATTCTCTTTCTACTGCTTCTGTTTCCTCCTCCCTCAC 953
Query 946 TTCTCTTTCTTAAT 959
||||||||||||||
Sbjct 954 TTCTCTTTCTTAAT 967
> AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141470-26143993
REVERSE LENGTH=1322
Length=1322
Score = 442 bits (239), Expect = 3e-123
Identities = 474/582 (81%), Gaps = 38/582 (7%)
Strand=Plus/Plus
Query 320 TTTGGACCATTGTGTATATGTC-TAGCAATGAACTACTTGGATCGTTTCTTATCTGTTCA 378
||||||||||||||| | || | |||||||||||||||||||||| |||||||| |||||
Sbjct 553 TTTGGACCATTGTGTTTTTG-CTTAGCAATGAACTACTTGGATCGATTCTTATCGGTTCA 611
Query 379 TGACTTGCCTAATGGAAAAGCTTGGACT-GTGCAATTGTTGGCTGTAGCTTGTTTATCAT 437
||| ||||||| ||| |||| ||||| | |||| ||||||||||| |||||||||||||
Sbjct 612 TGATTTGCCTAGTGGCAAAGGTTGGA-TATTGCAGTTGTTGGCTGTGGCTTGTTTATCAT 670
Query 438 TGGCAGCTAAGATAGAGGAAACT-AATGTTCCAGA-GTTAATACATCTGCAGGTTGGAGA 495
||||||| || || || |||||| || |||||| | ||| ||| |||| |||||||||||
Sbjct 671 TGGCAGCCAAAATTGAAGAAACTGAA-GTTCCA-ATGTTGATAGATCTTCAGGTTGGAGA 728
Query 496 TCCCT-TGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGATGGAACATTTAGTGTTGAACG 554
| ||| ||| |||||||||||||||||||| ||||| ||||| | ||| |||||||||
Sbjct 729 T-CCTCAGTTTGTGTTTGAGGCTAAATCAGTCCAAAGAATGGAGCTTTTGGTGTTGAACA 787
Query 555 TATTGAGATGGAGGTT-ACGAGCAGTGACACCGTGCTCTTACGTTAGATACTTCCTGTGT 613
||||| |||||| || | ||||| | || || ||||| ||| | ||||| |||||| |
Sbjct 788 AATTGAAATGGAGATTGA-GAGCAATAACTCCATGCTCATACATAAGATATTTCCTGAGA 846
Query 614 AAGATCAATGGTTATGATCAAGAACCA-CACAGCAGATTGATATCTAGATCACTACAAGT 672
||||| | | | ||||||||||||| | || || |||||||||||||||| |||||||
Sbjct 847 AAGATGAGTAAATGTGATCAAGAACCATC-CAACACATTGATATCTAGATCATTACAAGT 905
Query 673 GATAGCCAGCACAACCAAAGGTATTGACTTCTTGGAGTTTAGAGCTTCAGA-GATTGCTG 731
|||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||
Sbjct 906 GATAGCCAGCACAACCAAAGGTATTGACTTTTTGGAGTTTAGACCTTCTGAAG-TTGCTG 964
Query 732 CTGCAGTTGCTCTTTCTGTTTCTGGAGAA---CA-------C--TTTGACAAATTCT-CC 778
|||| || || |||||||||||||||||| || | |||||||| | || ||
Sbjct 965 CTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCAGAGAGTACACTTTGACAACT-CTTCC 1023
Query 779 TTCTTCTCACACCTTGAA-A--AGGTAAGAAAGGAGAGAATGAAGAAGATTGGTGAAATG 835
|||| ||| | | || | | | | |||||||||| |||||||||| || ||||||
Sbjct 1024 TTCT-CTC-CTCTTTTCTCACTACTTCA-AAAGGAGAGAGTGAAGAAGATAGGGGAAATG 1080
Query 836 ATAGAGAGAGATGGATCA-AGTTCAAGTTCACAAACACCCAA 876
|||||||| ||||| ||| | || | ||||||||||||||||
Sbjct 1081 ATAGAGAGTGATGGCTCAGACTT-ATGTTCACAAACACCCAA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5