BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487882
Length=2681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10500.1 | Symbols: | Kinase interacting (KIP1-like) family... 3880 0.0
> AT5G10500.1 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr5:3305331-3308109 FORWARD LENGTH=2704
Length=2704
Score = 3880 bits (2101), Expect = 0.0
Identities = 2511/2703 (93%), Gaps = 51/2703 (2%)
Strand=Plus/Plus
Query 1 AGATGAGATTTTGTTCAA-TGTATTG-AA-----TT-AAGAAAAGGATTAGAGAACAAGG 52
|||||||||||||||||| || |||| || || ||||||| |||||||||| || |
Sbjct 29 AGATGAGATTTTGTTCAATTG-ATTGAAATTTTTTTCAAGAAAAAGATTAGAGAATAAAG 87
Query 53 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCATGGTGGTGGGCAAGCCACGTTCGAACC 112
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 88 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCCTGGTGGTGGGCAAGCCACGTTCGAACC 147
Query 113 AAACAATCCAAATGGCTCGAAGAAAACCTTCAAGATATCGAGGATAAGGTGCAATATGCA 172
||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 148 AAACAATCCAAATGGCTTGAAGAAAACCTTCAAGATATCGAGGAGAAGGTGGAATATGCA 207
Query 173 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 267
Query 233 AGAAGACCTGAATTGATAAGTTTTGTGGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 292
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 268 AGAAGGCCTGAATTGATAAGTTTTGTAGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 327
Query 293 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCTAACACCACAATTGCATCTGTT 352
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 328 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCCAACACCACAATTGCATCTGTT 387
Query 353 TTTCCTGACCAAGTCCCTGAGTTTGCTATGAACGAAGACGACGACGATGATGCTCATGTC 412
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 388 TTTCCTGACCAAGTCCCTGAGTTTGCCATGAACGAAGATGACGACGATGATGCTCCTGTC 447
Query 413 GCACCTAAAAACCATAAAACTAACACATCAAACCAGAATGTTCCAAAGGTTCCTGACTTG 472
|||||| | ||||||||| ||| |||||||| ||||||||||||| |||||||| |||
Sbjct 448 TCACCTAGACACCATAAAAATAAGACATCAAATAAGAATGTTCCAAAAGTTCCTGATTTG 507
Query 473 CCAATAAAAAACTCTGAGGCTGCCAAGAAGATTTTCATGTCAAGGAAAGCTATTCAAGAA 532
|| |||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 508 CCCATAAAAGACCCTGAGGCTGCCAAGAAGATGTTCATGTCAAGGAAAGCTATTCAAGAA 567
Query 533 CAGAATGCCTCGTCCGTTG-TAATCAAGTCCGGGCTAAGTAAAACCGAGGCCGTGGAAGA 591
||||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct 568 CAGAATGCCTCGTCCGTTGTTAA-CAAGTCCGGGCTGAGTAAAACCGAGGCGGTGGAAGA 626
Query 592 GATTGATAAGTTGCAGAAAGAGATTCTTGTTTTGCAGACTGAGAAAGAGTTTGTGAAGAC 651
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 627 GATTGACAAGTTGCAGAAAGAGATTCTTGTTTTGCAAACTGAGAAAGAGTTTGTGAAGAC 686
Query 652 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 746
Query 712 AGGGAAAGTTTGTAGTTTGCAAGACGAGTTTGACGAAGGTGCTATTGTCATAGAAGATAA 771
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 747 AGGGAAAGTTTCTAGTTTGCAAGACGAGTTTGACGAAGGTGCTGTTGTTATAGAAGATAA 806
Query 772 AGAAGCTCAGAT-TCTGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 830
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AGAAGCTCAGATAT-TGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 865
Query 831 AGCTGAGAGATAAACAG-AA-AAGTAATGTGAAAGAAGTAGATGTTACAAGAAAACAGAT 888
||||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||
Sbjct 866 AGCTGAGAGATAAACAGGAACAA--AATGTGAAAGAAGTAGATGTTTCAAGAAAACAAAT 923
Query 889 CAGTGAATCAACAGAGGAATTTAGTAATATCTCTGATGCATTACTTGGTGATGGAAAAAG 948
|||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||| |
Sbjct 924 CAGTGAATCAACAGAGGAATTTGGTAATCTTTCTGATGCATTGCTTGGTGATGGGAAAGG 983
Query 949 AAACCAGGAAATATACAGCGAGAAGGAGAAGCTAAAATCATTAGGAGAAAAGGTATATAA 1008
|||||| || |||||||||||||| |||||| | | |||||||||||||||||| || |
Sbjct 984 AAACCATGAGATATACAGCGAGAAAGAGAAGTTGGAGTCATTAGGAGAAAAGGTAAATGA 1043
Query 1009 AGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACCATAACAGATGTGGCTGATAAGAT 1068
||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||
Sbjct 1044 TGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACTATTCCAGACGTGGCTGATAAAAT 1103
Query 1069 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAGCTTGTT-TACATCTCAAGCAGCTT 1127
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 1104 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAATTTGTTCT-CATCTCAAGCAGCTT 1162
Query 1128 TAATACACAGGTTAAGAGAAGAAATCGATGATCTCAAAGCACAGATAAGAGCTCTACAAA 1187
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1163 TAATACACAGACTAAGAGAAGAAATCGATGATCTCAAAGCACAGATTAGAGCTCTACAAA 1222
Query 1188 AAGAAAACAATTCATCTCAAACTGATGATAATATGAACATGAGAAAGAAGTTGAAAGAGA 1247
|||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1223 AAGAAAACAATTCATCTCAAACTGATGACAATATGGACATGGGAAAGAAGTTGAAAGAGA 1282
Query 1248 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1342
Query 1308 ACATTGACAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1367
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 ACATTGATAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1402
Query 1368 AAAGCTTgaagcaagaaggagaagaagaagaagaaTTAAAAGCTACTAATGTGCCAATTC 1427
||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||||||||
Sbjct 1403 AAAGCTTGACGCAAGAAGG-G--GAAGATGAAGAATTAAAGGCTACTAATGTGCCAATTC 1459
Query 1428 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATTCAGTTG 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1460 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATACCGTTG 1519
Query 1488 CGTCTGAAAATGCTTTAGGCATTAAATCAGCATCTGAAATAGTTATTGCTGAAAAAGATC 1547
||||||||||||||||| |||||||||||||||||| | ||| |||||||||| ||||
Sbjct 1520 TGTCTGAAAATGCTTTAGACATTAAATCAGCATCTGAGGTGGTTTTTGCTGAAAAGGATC 1579
Query 1548 TTACAAATGAAGTTAACCAAGAAGAGACTATTGAAACTAAAACAAAGGAAGCTTCATTAT 1607
|| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1580 TTTCCGATGAAGTTAACCAAGAAGAGGCTATTGAAACTAAAACAAAGGAAGCTTCGTTAT 1639
Query 1608 ATGATTTAGAGAAACGTATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1667
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 CTGATTTAGAGAAACACATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1699
Query 1668 CAGATGA-TGCATTCTTGCAGAAGTTCCTCGCACATGGGATCGAAGGCAGAGAGAAACAT 1726
||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1700 CAGATGAGTT-ATTCTTGCAGAAGTTGCTCGCACATGGGATCGAAGGCAGAGAAAAACAT 1758
Query 1727 TTGTTAAAC-GAGTACACTAGAGTACTTCGGAACTATAAAGAAGTAAAGAAGATGCTACA 1785
||||||| | || ||||| | |||||||||||||||||||||||| |||||| |||||||
Sbjct 1759 TTGTTAA-CTGAATACACCAAAGTACTTCGGAACTATAAAGAAGTGAAGAAGTTGCTACA 1817
Query 1786 TGAAACAGAAACAAAACTCAAGAGTGTAAACACCTTGAAAGATGAACAGGTCAGAGCCAA 1845
|||||| ||||| ||||| || | |||||||||||||||||||||| || || ||
Sbjct 1818 TGAAACTGAAACTAAACTGAAAAATGTAAACACCTTGAAAGATGAA--GG-CA-AG---- 1869
Query 1846 GGATCAACGACGGGACCAGTTGTTCATGCTAATTTGCAGAGAAGATAA---CGCCATAAA 1902
| |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1870 G-ATCAACAACGGGGCCAATTGTTCATGCTAATTTGCAGAGAAGATAATAACGCCACAAA 1928
Query 1903 TGCAATGACTGGTCAAAAGCAGAG-ATTGTCACCAAATAAAGAGCAATTCGGG-GCACGC 1960
|||||| ||||||||||| ||||| || |||||||||| |||||||||| ||| |||||
Sbjct 1929 TGCAATAACTGGTCAAAAACAGAGGAT-GTCACCAAATGAAGAGCAATT-GGGAGCACGA 1986
Query 1961 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2046
Query 2021 CAGATACAACAATTTGACACAGGGATCAAAGACTTACATGTTGAGATATTGAATATCATA 2080
| |||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 2047 AAAATACAACAGTTTGACACAGGGATCAAAGACTTACATGGTGAGATGTTGAAGATCATA 2106
Query 2081 AAACAAAAGAATCAAGATGGAGGAAAGAACACTCTAAGATCAAATGTTCGTCCCATATAC 2140
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2107 AAACAAAAGAATCAAGATGGAGGAAAAAACACTCTGAGATCAAATGTTCGTCCCATATAC 2166
Query 2141 AAACACCTCAGCGAGATCCACAACGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2200
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 2167 AAACACCTCAGCGAGATTCGCACCGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2226
Query 2201 AAAGAAGAAATCAACATCAGAGCTTCGACTTTGAGTGACATACAAAATGAGATAACAGAA 2260
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2227 AAAGAAGAAATCAACATCAGAGCTTCAACTTTGAGTGACATACACAATGAGATAACAGAA 2286
Query 2261 GCTCTCAAAACAGATTCTGAAGACTCTGAAATGAAACTTACAATCTACCAAGGAGCTAAA 2320
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 2287 GCTCTCAAAACAGATTCTGAAGACTCTGAAATAAAATTTACAATCTACCAAGGAGCCAAA 2346
Query 2321 TTTGAAGGCGAGGTTTCGAACATGAAGAAGGAGAACAATAGGATAGCAGAAGAGTTGCAA 2380
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2347 TTCGAAGGCGAGGTTTCAAACATGAAGAAGGAAAACAATAGGATTGCAGAAGAGTTGCAA 2406
Query 2381 ACAGGTTTAGAACAAGTTACAAAACTGATGAAGGATGCTGATACGACACTAGAGAAATTG 2440
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 2407 ACAGGTTTAGATCAAGTTACAAAACTGATGAAGGATGCTGATACAACACTCGAGAAACTA 2466
Query 2441 AGTGAGGAGTTTTCACTTTCCGAATCAAACGTACAGTCTTCGCAAGATCGCAAAACTCGT 2500
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 2467 AGTGAGGAGTTTTCACTTTCTGAATCAAACACACAGTCTTCGCAAGATCGTT---CTCGT 2523
Query 2501 ATTCCTTTGAGGTCATTTATCTTCGATATAAAACCGAAGAAACAAAGACTATCTCTTTTC 2560
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 2524 ATTCCTTTGAGGTCATTTATCTTCGATAGAAAACCGAAGAAGCAAAGACTATCCCTTTTC 2583
Query 2561 TCTTGTATTCAACCTTCATTGTCTAAAATGAAGAAGCCTGCTGGTTTATAGAAAACTTTT 2620
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 2584 TCTTGTATTCAACCTTCATTGTCTAAGATGAAGAAGCCTGCTGGTTCATAGAAAACTTTT 2643
Query 2621 ACAT--CTTTCCATGTACTACTACTACATATCAATTTAATGTGTTAATGGATTTAAATCT 2678
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2644 ACATATCTTTCCATGTACTACTACTACATATCAATT----GTGTTAATGGATTTAAATCT 2699
Query 2679 TTT 2681
|||
Sbjct 2700 TTT 2702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133143066722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5