BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487882 Length=2681 Score E Sequences producing significant alignments: (Bits) Value AT5G10500.1 | Symbols: | Kinase interacting (KIP1-like) family... 3880 0.0 > AT5G10500.1 | Symbols: | Kinase interacting (KIP1-like) family protein | chr5:3305331-3308109 FORWARD LENGTH=2704 Length=2704 Score = 3880 bits (2101), Expect = 0.0 Identities = 2511/2703 (93%), Gaps = 51/2703 (2%) Strand=Plus/Plus Query 1 AGATGAGATTTTGTTCAA-TGTATTG-AA-----TT-AAGAAAAGGATTAGAGAACAAGG 52 |||||||||||||||||| || |||| || || ||||||| |||||||||| || | Sbjct 29 AGATGAGATTTTGTTCAATTG-ATTGAAATTTTTTTCAAGAAAAAGATTAGAGAATAAAG 87 Query 53 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCATGGTGGTGGGCAAGCCACGTTCGAACC 112 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 88 ATGCTACGAAGAGCTGCGAGCAATGCGTACTCCTGGTGGTGGGCAAGCCACGTTCGAACC 147 Query 113 AAACAATCCAAATGGCTCGAAGAAAACCTTCAAGATATCGAGGATAAGGTGCAATATGCA 172 ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| Sbjct 148 AAACAATCCAAATGGCTTGAAGAAAACCTTCAAGATATCGAGGAGAAGGTGGAATATGCA 207 Query 173 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 CTTAAGCTTTTGGAAGATGAAGGTGATTCATTTGCTAAGCGTGCAGAAATGTATTACAAG 267 Query 233 AGAAGACCTGAATTGATAAGTTTTGTGGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 292 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 268 AGAAGGCCTGAATTGATAAGTTTTGTAGAAGAATCTTTCAAGGCTTATCGTGCTTTAGCA 327 Query 293 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCTAACACCACAATTGCATCTGTT 352 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 328 GAGCGGTATGATCATATCTCTAAAGAGCTTCAAAACGCCAACACCACAATTGCATCTGTT 387 Query 353 TTTCCTGACCAAGTCCCTGAGTTTGCTATGAACGAAGACGACGACGATGATGCTCATGTC 412 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| Sbjct 388 TTTCCTGACCAAGTCCCTGAGTTTGCCATGAACGAAGATGACGACGATGATGCTCCTGTC 447 Query 413 GCACCTAAAAACCATAAAACTAACACATCAAACCAGAATGTTCCAAAGGTTCCTGACTTG 472 |||||| | ||||||||| ||| |||||||| ||||||||||||| |||||||| ||| Sbjct 448 TCACCTAGACACCATAAAAATAAGACATCAAATAAGAATGTTCCAAAAGTTCCTGATTTG 507 Query 473 CCAATAAAAAACTCTGAGGCTGCCAAGAAGATTTTCATGTCAAGGAAAGCTATTCAAGAA 532 || |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 508 CCCATAAAAGACCCTGAGGCTGCCAAGAAGATGTTCATGTCAAGGAAAGCTATTCAAGAA 567 Query 533 CAGAATGCCTCGTCCGTTG-TAATCAAGTCCGGGCTAAGTAAAACCGAGGCCGTGGAAGA 591 ||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||| Sbjct 568 CAGAATGCCTCGTCCGTTGTTAA-CAAGTCCGGGCTGAGTAAAACCGAGGCGGTGGAAGA 626 Query 592 GATTGATAAGTTGCAGAAAGAGATTCTTGTTTTGCAGACTGAGAAAGAGTTTGTGAAGAC 651 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 627 GATTGACAAGTTGCAGAAAGAGATTCTTGTTTTGCAAACTGAGAAAGAGTTTGTGAAGAC 686 Query 652 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 TTCTTATGAGAATGGACTTGCAAAGTATTGGGAGATTGAGAAATGTATCATGGAGAAACA 746 Query 712 AGGGAAAGTTTGTAGTTTGCAAGACGAGTTTGACGAAGGTGCTATTGTCATAGAAGATAA 771 ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 747 AGGGAAAGTTTCTAGTTTGCAAGACGAGTTTGACGAAGGTGCTGTTGTTATAGAAGATAA 806 Query 772 AGAAGCTCAGAT-TCTGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 830 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 AGAAGCTCAGATAT-TGATGTCTACCACAGCTCTCAAATCATGCCAAGAGAAACTAGAAG 865 Query 831 AGCTGAGAGATAAACAG-AA-AAGTAATGTGAAAGAAGTAGATGTTACAAGAAAACAGAT 888 ||||||||||||||||| || || ||||||||||||||||||||| |||||||||| || Sbjct 866 AGCTGAGAGATAAACAGGAACAA--AATGTGAAAGAAGTAGATGTTTCAAGAAAACAAAT 923 Query 889 CAGTGAATCAACAGAGGAATTTAGTAATATCTCTGATGCATTACTTGGTGATGGAAAAAG 948 |||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||| | Sbjct 924 CAGTGAATCAACAGAGGAATTTGGTAATCTTTCTGATGCATTGCTTGGTGATGGGAAAGG 983 Query 949 AAACCAGGAAATATACAGCGAGAAGGAGAAGCTAAAATCATTAGGAGAAAAGGTATATAA 1008 |||||| || |||||||||||||| |||||| | | |||||||||||||||||| || | Sbjct 984 AAACCATGAGATATACAGCGAGAAAGAGAAGTTGGAGTCATTAGGAGAAAAGGTAAATGA 1043 Query 1009 AGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACCATAACAGATGTGGCTGATAAGAT 1068 ||||||||||||||||||||||||||||||||||| || |||| ||||||||||| || Sbjct 1044 TGAGTTTGATGACTCTGAGGCTAAGTCATGTCTTACTATTCCAGACGTGGCTGATAAAAT 1103 Query 1069 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAGCTTGTT-TACATCTCAAGCAGCTT 1127 ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| Sbjct 1104 CGATGAGCTTGTGAATGATGTGATCAATTTGGAGAATTTGTTCT-CATCTCAAGCAGCTT 1162 Query 1128 TAATACACAGGTTAAGAGAAGAAATCGATGATCTCAAAGCACAGATAAGAGCTCTACAAA 1187 |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1163 TAATACACAGACTAAGAGAAGAAATCGATGATCTCAAAGCACAGATTAGAGCTCTACAAA 1222 Query 1188 AAGAAAACAATTCATCTCAAACTGATGATAATATGAACATGAGAAAGAAGTTGAAAGAGA 1247 |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| Sbjct 1223 AAGAAAACAATTCATCTCAAACTGATGACAATATGGACATGGGAAAGAAGTTGAAAGAGA 1282 Query 1248 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1283 TGGAGGAAAAGGTGAATGGTGTTAAAGATATAGACCAAGAAGTTGAAGAAAAGAGTGACA 1342 Query 1308 ACATTGACAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1367 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1343 ACATTGATAAACATCTTACGAGAGCACATATGAAACTAAGTTTCTTATCCAAGAGATTAA 1402 Query 1368 AAAGCTTgaagcaagaaggagaagaagaagaagaaTTAAAAGCTACTAATGTGCCAATTC 1427 ||||||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||| Sbjct 1403 AAAGCTTGACGCAAGAAGG-G--GAAGATGAAGAATTAAAGGCTACTAATGTGCCAATTC 1459 Query 1428 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATTCAGTTG 1487 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1460 AAGATATAGGATCTTTGACTGATACAAAGTTTCCAGAGGAAAACATTGATGATACCGTTG 1519 Query 1488 CGTCTGAAAATGCTTTAGGCATTAAATCAGCATCTGAAATAGTTATTGCTGAAAAAGATC 1547 ||||||||||||||||| |||||||||||||||||| | ||| |||||||||| |||| Sbjct 1520 TGTCTGAAAATGCTTTAGACATTAAATCAGCATCTGAGGTGGTTTTTGCTGAAAAGGATC 1579 Query 1548 TTACAAATGAAGTTAACCAAGAAGAGACTATTGAAACTAAAACAAAGGAAGCTTCATTAT 1607 || | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1580 TTTCCGATGAAGTTAACCAAGAAGAGGCTATTGAAACTAAAACAAAGGAAGCTTCGTTAT 1639 Query 1608 ATGATTTAGAGAAACGTATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1667 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1640 CTGATTTAGAGAAACACATCTCATCACCAAAATCAGACATCATAACAACACAAGAGTCAT 1699 Query 1668 CAGATGA-TGCATTCTTGCAGAAGTTCCTCGCACATGGGATCGAAGGCAGAGAGAAACAT 1726 ||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1700 CAGATGAGTT-ATTCTTGCAGAAGTTGCTCGCACATGGGATCGAAGGCAGAGAAAAACAT 1758 Query 1727 TTGTTAAAC-GAGTACACTAGAGTACTTCGGAACTATAAAGAAGTAAAGAAGATGCTACA 1785 ||||||| | || ||||| | |||||||||||||||||||||||| |||||| ||||||| Sbjct 1759 TTGTTAA-CTGAATACACCAAAGTACTTCGGAACTATAAAGAAGTGAAGAAGTTGCTACA 1817 Query 1786 TGAAACAGAAACAAAACTCAAGAGTGTAAACACCTTGAAAGATGAACAGGTCAGAGCCAA 1845 |||||| ||||| ||||| || | |||||||||||||||||||||| || || || Sbjct 1818 TGAAACTGAAACTAAACTGAAAAATGTAAACACCTTGAAAGATGAA--GG-CA-AG---- 1869 Query 1846 GGATCAACGACGGGACCAGTTGTTCATGCTAATTTGCAGAGAAGATAA---CGCCATAAA 1902 | |||||| ||||| ||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 1870 G-ATCAACAACGGGGCCAATTGTTCATGCTAATTTGCAGAGAAGATAATAACGCCACAAA 1928 Query 1903 TGCAATGACTGGTCAAAAGCAGAG-ATTGTCACCAAATAAAGAGCAATTCGGG-GCACGC 1960 |||||| ||||||||||| ||||| || |||||||||| |||||||||| ||| ||||| Sbjct 1929 TGCAATAACTGGTCAAAAACAGAGGAT-GTCACCAAATGAAGAGCAATT-GGGAGCACGA 1986 Query 1961 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1987 GTTGATGCATTACTAAGCGAGAACTTGAACTTATTGGTGAGGTTTAGCAACTCTTTTGGC 2046 Query 2021 CAGATACAACAATTTGACACAGGGATCAAAGACTTACATGTTGAGATATTGAATATCATA 2080 | |||||||| |||||||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 2047 AAAATACAACAGTTTGACACAGGGATCAAAGACTTACATGGTGAGATGTTGAAGATCATA 2106 Query 2081 AAACAAAAGAATCAAGATGGAGGAAAGAACACTCTAAGATCAAATGTTCGTCCCATATAC 2140 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2107 AAACAAAAGAATCAAGATGGAGGAAAAAACACTCTGAGATCAAATGTTCGTCCCATATAC 2166 Query 2141 AAACACCTCAGCGAGATCCACAACGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2200 ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 2167 AAACACCTCAGCGAGATTCGCACCGAAATGACTGTTTGGTTAGAGAAGAGTTTGCTTTTA 2226 Query 2201 AAAGAAGAAATCAACATCAGAGCTTCGACTTTGAGTGACATACAAAATGAGATAACAGAA 2260 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 2227 AAAGAAGAAATCAACATCAGAGCTTCAACTTTGAGTGACATACACAATGAGATAACAGAA 2286 Query 2261 GCTCTCAAAACAGATTCTGAAGACTCTGAAATGAAACTTACAATCTACCAAGGAGCTAAA 2320 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| Sbjct 2287 GCTCTCAAAACAGATTCTGAAGACTCTGAAATAAAATTTACAATCTACCAAGGAGCCAAA 2346 Query 2321 TTTGAAGGCGAGGTTTCGAACATGAAGAAGGAGAACAATAGGATAGCAGAAGAGTTGCAA 2380 || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2347 TTCGAAGGCGAGGTTTCAAACATGAAGAAGGAAAACAATAGGATTGCAGAAGAGTTGCAA 2406 Query 2381 ACAGGTTTAGAACAAGTTACAAAACTGATGAAGGATGCTGATACGACACTAGAGAAATTG 2440 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct 2407 ACAGGTTTAGATCAAGTTACAAAACTGATGAAGGATGCTGATACAACACTCGAGAAACTA 2466 Query 2441 AGTGAGGAGTTTTCACTTTCCGAATCAAACGTACAGTCTTCGCAAGATCGCAAAACTCGT 2500 |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct 2467 AGTGAGGAGTTTTCACTTTCTGAATCAAACACACAGTCTTCGCAAGATCGTT---CTCGT 2523 Query 2501 ATTCCTTTGAGGTCATTTATCTTCGATATAAAACCGAAGAAACAAAGACTATCTCTTTTC 2560 |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 2524 ATTCCTTTGAGGTCATTTATCTTCGATAGAAAACCGAAGAAGCAAAGACTATCCCTTTTC 2583 Query 2561 TCTTGTATTCAACCTTCATTGTCTAAAATGAAGAAGCCTGCTGGTTTATAGAAAACTTTT 2620 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 2584 TCTTGTATTCAACCTTCATTGTCTAAGATGAAGAAGCCTGCTGGTTCATAGAAAACTTTT 2643 Query 2621 ACAT--CTTTCCATGTACTACTACTACATATCAATTTAATGTGTTAATGGATTTAAATCT 2678 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2644 ACATATCTTTCCATGTACTACTACTACATATCAATT----GTGTTAATGGATTTAAATCT 2699 Query 2679 TTT 2681 ||| Sbjct 2700 TTT 2702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 133143066722 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5