BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487885
Length=1858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10520.1 | Symbols: RBK1 | ROP binding protein kinases 1 | c... 2813 0.0
AT5G65530.1 | Symbols: | Protein kinase superfamily protein | ... 931 0.0
> AT5G10520.1 | Symbols: RBK1 | ROP binding protein kinases 1 |
chr5:3320370-3322910 REVERSE LENGTH=1879
Length=1879
Score = 2813 bits (1523), Expect = 0.0
Identities = 1767/1881 (94%), Gaps = 32/1881 (2%)
Strand=Plus/Plus
Query 1 AAAGCTGACTCTTCTTCTAACTTTCTATTTCTTCCAAGAATAACTAA-TTTTTCTCTCAC 59
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 5 AAAGCTGACTCTTCTTCTAACTTTCTATTTCTTCCAAGAATAACAAACTTTTT-TCTCAT 63
Query 60 AAGAATCATAACAAGATTTATATAAAAGTTTTCATTAAACCTCTG-TTTCTTGTTTCTGT 118
||||| || ||||||| || || |||| || |||||||||||||| |||||||||||| |
Sbjct 64 AAGAAACAAAACAAGAATTCTACAAAACTTCTCATTAAACCTCTGTTTTCTTGTTTCTCT 123
Query 119 TCTGCTCTGTATTTTCGACAATTCTCTCTGTTTTGTGTCCTTTCTTATTTTCTGGGAATC 178
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 124 TCTGCTCTGTATTTTCGATAATTCTCTCTGTTTTGTATCCTTTCTTATTTTCTGTGAATC 183
Query 179 TG--TTTTTATGGAAATTTAATTCAAAATCCTATT------AG-AAG-AAG--AAAG-aa 225
|| ||||||||||||||||||||||| | |||| || ||| ||| |||| ||
Sbjct 184 TGTTTTTTTATGGAAATTTAATTCAAAGGCTTATTAGAGGAAGAAAGAAAGAAAAAGAAA 243
Query 226 aaaaaa-CCATTGGAGCTATGGCTGTTGAAGAGAACAAGAACAAAGAAAGCAAAGATCAT 284
|||||| ||| ||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct 244 AAAAAACCCACTGGAGCTATGGCTGTTGAAGATAACAAGAACAGTGAAAGCAAAAATCAT 303
Query 285 CAAGAGATAGAGCTTCATAGGAACGACTTAGGCCTCGAAGATTCATCATCGCCAAGAGGT 344
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CAAGAGGTAGAGCTTCATAGGAACGACTTAGGCCTCGAAGATTCATCATCGCCAAGAGGT 363
Query 345 GTTCTTGGAATGGTTTCAGATTCTGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCT 404
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 364 GTTCTCGGAATGGTTTCAGATTCCGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCT 423
Query 405 GATGATAAATCATCATCAACATCGTCACCATTTTCAAATACTACTAAAAACGTTTCGTCT 464
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 424 GATGATAAATCATCATCAACATCGTCACCATTTTCAAATACTACTAAAACCGTTTCGTCT 483
Query 465 TCTTC-CCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGAG 523
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TC-TCACCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGAG 542
Query 524 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTATGAACTCACCCGTAAAAACTTGCGTCG 583
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 543 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTACGAACTCACCCGTAAAAACTTGCGTCG 602
Query 584 TAAGCAACCTAAGCTCTCTCCCTCTGAGAAG-GCCTTT-ACCTGTGAAGCCTTCTTTATG 641
||||||||||||||| ||||||||||| || | |||| |||||||||||||||||||||
Sbjct 603 TAAGCAACCTAAGCTAACTCCCTCTGAG-AGTG-CTTTCACCTGTGAAGCCTTCTTTATG 660
Query 642 GCTAAACCCTCTTGGAGAAACTTCACTTACGAAGAGCTCGCTGTAGCCACCGATTATTTC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTAAACCCTCTTGGAGAAACTTCACTTACGAAGAGCTCGCTGTAGCCACCGATTATTTC 720
Query 702 AATCCTGAGAATATGATTGGGAAGGGAGGTCATGCGGAGGTATACAAAGGGGTTTTGCTT 761
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 721 AATCCTGAGAACATGATTGGTAAGGGAGGACATGCGGAGGTATACAAAGGGGTTTTGATT 780
Query 762 AATGGTGAGACGGTAGCTATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGAAAGA 821
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AATGGTGAGACGGTGGCGATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGAAAGA 840
Query 822 GTGAGCGATTTCCTTTCAGAGCTTGGTATAATCGCACATGTAAACCACCCAAACGCAGCT 881
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGAGCGATTTCCTTTCAGAGCTCGGTATAATCGCACATGTAAACCACCCAAACGCAGCT 900
Query 882 AGGCTTCGTGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTCCCTAT 941
|||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 901 AGGCTTCGCGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTTCTTGAGTACGCTCCCTAT 960
Query 942 GGCAGCCTTGCTTCTATGCTCTTTGGATCAGAGGAATGTCTAGAGTGGAAGATAAGGTAT 1001
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGCAGCCTCGCTTCTATGCTTTTTGGATCAGAGGAATGTCTAGAGTGGAAGATAAGGTAT 1020
Query 1002 AAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCACAATGCTTGCCCAAGACGG 1061
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1021 AAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCATAATGCTTGTCCAAGAAGG 1080
Query 1062 ATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAACCGCGATTACGAAGCTCAG 1121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1081 ATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAACCACGATTACGAAGCTCAG 1140
Query 1122 ATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCATCATGTTGTATTC 1181
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 ATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCACCATGTTGTATTC 1200
Query 1182 CCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGCATTGTTGAT 1241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 CCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTATTTCATGCACGGCATTGTTGAT 1260
Query 1242 GAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCAGTCGCCGA 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCAGTCGCCGA 1320
Query 1302 GCTGTTGATACTGCAAGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTTCTTGAGAAG 1361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GCTGTTGATACAGCAAGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTTCTTGAGAAA 1380
Query 1362 AATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATAAGTTTAATCCAACAGAGATG 1421
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1381 AATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATATGTTTAATCCAACAGAGATG 1440
Query 1422 CAACGGGTGATGCTAACAGCTTCAATGTGTATACATCATATAGCCGCAATGCGACCTGAC 1481
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1441 CAACGAGTGATGCTAACAGCTTCAATGTGTGTACATCATATTGCCGCAATGCGACCTGAC 1500
Query 1482 ATGACCCGGTTGGTGCAGCTGTTGCGTGGAGAAGACGGGCCAGCTGAGCTGCAGCAGAAG 1541
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1501 ATGACTCGGTTGGTGCAGCTGTTACGTGGAGAAGACGGACCAGCTGAGCTACAGCAGAAG 1560
Query 1542 ACAGGGGAAAGAG-AGGTGAGTGTAAACGCATGCGATCTACAAGATCACACCTCTTCCTC 1600
|||| |||||| | |||| || ||||| || ||||||||||||||||||||||||||
Sbjct 1561 GCAGGTGAAAGAACAA-TGAGCGTGAACGCTTGTGATCTACAAGATCACACCTCTTCCTC 1619
Query 1601 GTACCTCAACGAACTCAGTCGCCATAGGCAACTCTTGATGGAGTAAGTAGAAGCAGTAAG 1660
||||||||||||||| | ||||||||||||||||| ||||||| |||||||||| |||
Sbjct 1620 ATACCTCAACGAACTCCGCCGCCATAGGCAACTCTTAATGGAGTGAGTAGAAGCAATAAC 1679
Query 1661 ATCAACTTAAAGAACTGTTTATCTTCCTCTACctttttagatttttattttcttgacttg 1720
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1680 ATCAACTTAAAGAACTGTTTATCAACCTCTTTCTTTTTAGATTTTTATTTTCTTGACTTG 1739
Query 1721 agttttgcttggtattctccattggttgcttttttttGCTTTTCCAACCAAAACTGTGAA 1780
||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 1740 AGTTTTGCTTGTTATTCTCCATTGGTTGCTTTTTTTT-CTTGTCCAACCAAA-CTGTGAA 1797
Query 1781 TATCATCAACATGTGTCTCTCTGTTG-TTCTACTTGAACTTTGTTAGTTTCAACCTC--G 1837
|||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||| |
Sbjct 1798 TATCTTCAACTTGTGTCTCTCTGTTGCTTCTACT-GAACTTTGTTAGTCTCAACCTCTCG 1856
Query 1838 AAAAGAGTTGTCAATTTGTTA 1858
| |||||||||||||||||
Sbjct 1857 GTA-GAGTTGTCAATTTGTTA 1876
> AT5G65530.1 | Symbols: | Protein kinase superfamily protein
| chr5:26190592-26193106 REVERSE LENGTH=1903
Length=1903
Score = 931 bits (504), Expect = 0.0
Identities = 1145/1441 (79%), Gaps = 97/1441 (7%)
Strand=Plus/Plus
Query 239 AGCTATGGCTGTTGAAGAGAACAAGAACAAAGAAAGCAAA-G-ATCATCAAGAGATAGAG 296
|||||||||||||||||||| |||| ||| | |||| | | | ||||||| |||
Sbjct 277 AGCTATGGCTGTTGAAGAGATGGAGAA-GAAG--ATCAAAGGAAGC--CAAGAGACGGAG 331
Query 297 CTTCATAGGAACGACTTAGGC-CTCGAAGATTCATCATCGCCAAGA-G-GTG-TT---CT 349
|| |||| ||||||||| | ||||||| | |||| |||||| | ||| || |
Sbjct 332 CTACATAAAAACGACTTA-TCAATCGAAGA--C-CCATCTCCAAGATGCGTGCTTGAAAT 387
Query 350 T--GG-AATG-GTTTCAGATTCTGACAACAGCAGCAGTAGTTGCAGCTCTTGTTCCTCTG 405
| || |||| | ||||||||| || ||||||||| ||||| ||||| |||| |||
Sbjct 388 TCCGGTAATGAG-TTCAGATTCCGATAACAGCAGC---AGTTGTAGCTCGTGTT-CTC-- 440
Query 406 ATGATAAATCATCATCAACATCGTCACCATTTTCAA-ATACTACTAAAAACGTTTCGTCT 464
|||| | | || ||||||| ||||| |||| | ||| || |||||||||||||
Sbjct 441 CTGAT--A--A--AT---CATCGTCGCCATTATCAACA-ACTCCTCCAAACGTTTCGTCT 490
Query 465 TCTTCCCATGGTCTTCAATGGAACAAAATGATTGAATCTATCAAGAAGAAGTCCATGA-G 523
| || || |||||||||||| ||||| ||||| ||||||||||| || || | |
Sbjct 491 T-TT--CA------TCAATGGAACAAGATGATCGAATCCATCAAGAAGAAATCAATTAGG 541
Query 524 ACGATTCTCTGTCATTCCTCTTCTTGCAAGTTATGAACTCACCCGTAAAAACTTGCGTCG 583
| ||||||||||||||||||| || || || || || |||||||| ||||| |
Sbjct 542 A-GATTCTCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGCAAAAA--------G 592
Query 584 TAAGCAACCTAAGCTCTCTCC---CTCTGAGAAGGCCTT-TACCTGTGAAGC-CTTCTTT 638
|| ||||| || || ||||| || || || | ||| | |||| | | || |
Sbjct 593 -AAACAACCGAAACTATCTCCTTGTTCAGAAAACGACTTCGA-TTGTG-ATCAAATCCTC 649
Query 639 ATGGCTAAACCCTCTTGGAGAAACTTCA-CTTACGAAGAGCTCGCTGTAGCCACCGATTA 697
| |||||||| || ||| | || |||| ||| ||| || |||| || |||||||| |
Sbjct 650 GTCGCTAAACCTTCGTGGCGTAATTTCACCTT-CGACGAACTCGTTGCCGCCACCGACAA 708
Query 698 TTTCAATCCTGAGAATATGATTGGGAAGGGAGGTCATGCGGAGGTATACAAAGGGGTTTT 757
||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 709 TTTTAATCCCGAGAACATGATTGGGAAAGGAGGACATGCGGAGGTGTACAAAGGGGTTTT 768
Query 758 GCTTAATGGTGAGACGGTAGCTATTAAGAAGCTGATGAGTCACGCCAAGGAAGAAGAAGA 817
| | || ||||| || || || |||||||||| ||| || || ||||||| ||||||
Sbjct 769 ACCGGACGGAGAGACTGTGGCGATCAAGAAGCTGACGAGACATGCAAAGGAAGTAGAAGA 828
Query 818 AAGAGTGAGCGATTTCCTT-TCAGAGCTTGGTATAATCGCACATGTAAACCACCCAAACG 876
| |||| || ||||| ||| || |||||||| |||||||||||||| ||||| |||||||
Sbjct 829 ACGAGTCAGTGATTT-CTTATCGGAGCTTGGGATAATCGCACATGTTAACCATCCAAACG 887
Query 877 CAGCTAGGCTTCGTGGTTTCAGCAGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTC-T 935
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 888 CAGCTAGGCTTCGTGGTTTCAGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTT 947
Query 936 CCCTATGGCAGCCTTGCTTCTATGCTCTTTGGATCAGAGGAATGTCTAGAGTGGAAGATA 995
| | ||||||| ||||||||| | ||||||||||||||||| ||| | || ||||||| |
Sbjct 948 CTC-ATGGCAGTCTTGCTTCTCTACTCTTTGGATCAGAGGAGTGTTTGGATTGGAAGA-A 1005
Query 996 A-GGTATAAAGTGGCTCTAGGTATAGCTGATGGTCTGAGTTATCTTCACAATGCTTGCCC 1054
| |||||||||||||| | ||||||||||||||| ||||||||||||| || | ||||||
Sbjct 1006 ACGGTATAAAGTGGCTATGGGTATAGCTGATGGTTTGAGTTATCTTCATAACGATTGCCC 1065
Query 1055 AAGACGGATCATTCACCGTGACATCAAAGCTTCTAACATATTGCTCAAC-CGCGATTACG 1113
||||||| |||||||| |||||||||||||| ||||| |||||| | | || ||||
Sbjct 1066 TCGACGGATTATTCACCGAGACATCAAAGCTTCCAACATTTTGCTC-TCTCAAGACTACG 1124
Query 1114 AAGCTCAGATTTCAGATTTCGGACTTGCAAAATGGCTCCCAGAGAACTGGCCTCATCATG 1173
||||||||||||| ||||| ||||| || || |||||||||||| | |||||||||||
Sbjct 1125 AAGCTCAGATTTCGGATTTTGGACTAGCTAAGTGGCTCCCAGAGCATTGGCCTCATCACA 1184
Query 1174 TTGTATTCCCCATTGAAGGAACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGCA 1233
|||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1185 TTGTTTTCCCTATCGAAGGCACATTCGGATATCTAGCTCCAGAGTACTTCATGCACGGGA 1244
Query 1234 TTGTTGATGAGAAGATTGATGTGTTTGCCTTTGGAGTATTGCTTCTAGAGATCATAACCA 1293
|||| |||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1245 TTGTCGATGAGAAGACGGATGTTTTTGCTTTTGGTGTATTGCTTCTAGAGATCATAACTG 1304
Query 1294 GTCGCCGAGCTGTTGATACTGCA-AGCAGGCAGAGCATTGTTGCATGGGCAAAACCTTTT 1352
|||| |||||||||||||| | | ||| |||| ||||| ||| |||||||||||| ||
Sbjct 1305 GTCGTCGAGCTGTTGATACCG-ATAGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTT 1363
Query 1353 CTTGAGAAGAATAGCATGGAGGACATTGTGGATCCTCGGCTAGGAAATAAGTTTAATCCA 1412
|| |||||||| | |||||| || || || ||||||| |||||| ||| | ||| || |
Sbjct 1364 CTGGAGAAGAACAACATGGAAGAAATAGTTGATCCTCAGCTAGGCAATGACTTTGATGAA 1423
Query 1413 ACAGAGATGCAACGGGTGATGCTAACAGCTTCAATGTGTATACATCATATAGCCGCAATG 1472
|| |||||| |||| ||||||| ||||||||||||||| ||||| ||| || || | |||
Sbjct 1424 ACCGAGATGAAACGAGTGATGCAAACAGCTTCAATGTGCATACACCATGTATCCACTATG 1483
Query 1473 CGACCTGACATGACCCGGTTGGTGCAGCTGTTGCGTGGAGAAGACGGGCCAGCTGAGCTG 1532
|| |||||||||| ||||||||| ||||||||||| ||||| ||| | || | |||||
Sbjct 1484 CGTCCTGACATGAACCGGTTGGTTCAGCTGTTGCGCGGAGATGAC---C-AGTT-AGCTG 1538
Query 1533 CAGCAGAAGAC-AGG-GGA--AAGAG-AGGTGAGTGTAAACGCAT-GCGATCTACAAGAT 1586
| || || || ||| ||| |||| || ||||| | ||| || |||| || | |||
Sbjct 1539 AA-CAAAA-ACCAGGTGGAGCAAGAACAG-TGAGTCTCGACG-ATTGCGA-CTT-A-GAT 1591
Query 1587 CACACCTCTTCCTCGTACCTCAACGAACTCAGTCGCCATAGGCAACTCTTGATGGAGTAA 1646
|||||||||||||| ||||| ||||| |||| ||| ||||| || ||||| |||||||||
Sbjct 1592 CACACCTCTTCCTCTTACCTTAACGATCTCACTCGACATAGACAGCTCTTAATGGAGTAA 1651
Query 1647 G 1647
|
Sbjct 1652 G 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91967398440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5