BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487889
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10560.1 | Symbols: | Glycosyl hydrolase family protein | c... 3768 0.0
> AT5G10560.1 | Symbols: | Glycosyl hydrolase family protein |
chr5:3336255-3339366 REVERSE LENGTH=2474
Length=2474
Score = 3768 bits (2040), Expect = 0.0
Identities = 2305/2432 (95%), Gaps = 22/2432 (1%)
Strand=Plus/Plus
Query 1 ATTTTCCACGAAAATATGAATCATCAGTTGACTCTAATCTCATTAGTCTTCTTCACTTCA 60
||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 1 ATTTTCCTCCAAAATATGAATCTTCAGTTGACTCTAATCTCCTTACTCTTCTTCACTTCC 60
Query 61 GCCATAGCTGAAACCTTCAAAAACCTCGATTCTCATCCACAGTTCCCCTGTAAACCTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GCCATAGCTGAAACCTTCAAAAACCTCGATTCTCATCCACAGTTCCCTTGTAAACCTCCT 120
Query 121 CATTTCAGCTCTTA-CCCATTCTGCAACGTATCTTTATCCATAAAACAACGAGCAATTTC 179
||||| |||||||| ||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 121 CATTTTAGCTCTTATCCC-TTCTGCAATGTCTCTTTATCCATAAAACAACGAGCAATTTC 179
Query 180 TCTCGTCTCTCTCCTTACGCTCCCGGAGAAGATCGGTCAGCTTTCAACCACAGCTGCTTC 239
||||||||| ||||| | |||||| |||||||| |||||||| |||| ||||||||||||
Sbjct 180 TCTCGTCTCCCTCCTCATGCTCCCAGAGAAGATAGGTCAGCTCTCAAACACAGCTGCTTC 239
Query 240 AGTACCTCGTCTCGGTATCCCTCCGTACGAGTGGTGGTCGGAGTCGTTACACGGACTCGC 299
|||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 AGTACCCCGTCTCGGTATTCCTCCGTACGAGTGGTGGTCGGAGTCTTTACACGGACTCGC 299
Query 300 TGATAACGGTCCCGGCGTCTCTTTCAACGGTTCAATCTCCGCCGCTACTAGTTTTCCTCA 359
|||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CGATAACGGTCCCGGAGTTTCCTTCAACGGTTCGATCTCCGCCGCTACTAGTTTTCCTCA 359
Query 360 GGTAATCGTATCAGCCGCATCTTTCAATAGAACGCTATGGTACGAGATCGGATCTGCTGT 419
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GGTAATCGTATCTGCTGCATCTTTCAATAGAACGCTATGGTACGAGATTGGATCTGCTGT 419
Query 420 TGCGGTGGAAGCTCGGGCTATGTACAACGGTGGTCAAGCTGGGTTGACTTTTTGGGCTCC 479
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 TGCGGTGGAAGGTCGGGCTATGTACAACGGTGGTCAAGCTGGGTTGACGTTTTGGGCTCC 479
Query 480 GAATATAAATGTGTTTAGGGATCCGAGATGGGGAAGAGGGCAGGAGACTCCTGGTGAGGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GAATATAAATGTGTTTAGGGATCCGAGATGGGGAAGAGGACAGGAGACTCCTGGTGAGGA 539
Query 540 TCCAAAGGTAGTTTCCGAGTATGGAGTTGAGTTCGTTAGAGGGTTTCAAGAGAAGAAGAA 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCGAAGGTAGTTTCCGAGTATGGAGTTGAGTTCGTTAGAGGGTTTCAAGAGAAGAAGAA 599
Query 600 GAGGAAGGTTTTGAAAAGAAGATTTGGTAGTGATAG-TGTtgatgatgatgctcgttatg 658
||||||||||||||||||||| || ||||||| | |||||||||||| |||| |||
Sbjct 600 AAGGAAGGTTTTGAAAAGAAGA-TT--TAGTGAT-GATGTTGATGATGA---TCGTCATG 652
Query 659 atgatgatgatgatgGGAAACTCATGTTATCTGCTTGTTGTAAGCATTTCACTGCCTATG 718
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ATGATGATGCTGATGGGAAGCTCATGTTATCTGCTTGTTGTAAGCATTTCACTGCCTATG 712
Query 719 ATTTGGAAAAATGGGGGAATTTCACTAGATACGACTTCAATGCTGTGGTCACAGAACAGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ATTTGGAAAAATGGGGGAATTTCACTAGATACGACTTCAATGCTGTGGTCACAGAACAGG 772
Query 779 ACATGGAAGACACATATCAGCCCCCATTTGAGACTTGTATAAAAGATGGTAAAGCTAGCT 838
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 773 ACATGGAAGACACATATCAGCCCCCATTTGAGACTTGTATAAGAGATGGTAAAGCTAGCT 832
Query 839 GCTTGATGTGTTCATATAATGCAGTTAATGGGGTCCCTGCTTGTGCGCAAGGAGACTTAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GCTTGATGTGTTCATATAATGCAGTTAATGGGGTCCCTGCTTGTGCGCAAGGAGACTTAT 892
Query 899 TACAAAAAGCTCGAGTTGAATGGGGATTTGAAGGGTACATTACATCAGACTGTGATGCTG 958
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TACAAAAAGCTCGAGTTGAGTGGGGATTTGAAGGGTACATTACATCAGACTGTGATGCTG 952
Query 959 TGGCAACCATTTTTGAGTACCAAGGATATACTAAGTCACCTGAGGAAGCTGTTGCTGATG 1018
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 TGGCAACTATTTTTGCGTACCAAGGATATACCAAGTCACCTGAGGAAGCTGTTGCTGATG 1012
Query 1019 CCATAAAAGCAGGGGTGGATATAAATTGTGGAACATACATGCTTCGGAACACACAATCTG 1078
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1013 CCATAAAAGCAGGGGTGGATATAAATTGTGGAACATACATGCTTCGGCACACACAATCTG 1072
Query 1079 CGATTGAGCAAGGGAAGGTGAGCGAAGAACTAGTAGACCGAGCTCTGCTAAATCTCTTTG 1138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CGATTGAGCAGGGGAAGGTGAGCGAAGAACTAGTAGACCGAGCTCTGCTAAATCTCTTTG 1132
Query 1139 CTGTTCAACTTCGTCTTGGACTTTTTGATGGTGATCCAAGAGGAGGACATTACGGAAAGT 1198
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1133 CTGTTCAACTTCGTCTTGGACTTTTTGATGGTGATCCAAGAAGAGGACAGTACGGAAAGT 1192
Query 1199 TAGGATCAAATGACATTTGTAGCTCAGACCACAGAAAATTGGCACTGGAAGCAGCAAGAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1193 TAGGATCAAATGACATTTGTAGCTCAGACCACAGAAAATTGGCACTGGAAGCAACAAGAC 1252
Query 1259 AGGGTATCGTGCTTCTGAAAAATGATCACAAGTTGTTGCCTTTGAACAAAAACCATGTTT 1318
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGGGTATCGTGCTCCTGAAAAATGATCACAAGTTGTTGCCTTTGAACAAAAACCATGTTT 1312
Query 1319 CTTCTTTAGCAATCGTTGGTCCAATGGCGAATAATATAAGCAATATGGGCGGTACTTATA 1378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CTTCATTAGCAATCGTTGGTCCAATGGCGAATAATATAAGCAATATGGGCGGTACTTATA 1372
Query 1379 CAGGAAAGCCGTGTCAACGCAAGACTCTGTTCACGGAACTTCTGGAGTATGTAAAGAAGA 1438
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1373 CAGGAAAGCCGTGTCAACGAAAGACTTTGTTCACGGAACTTCTGGAGTATGTGAAGAAGA 1432
Query 1439 CATCTTATGCGTCTGGTTGCTCAGACGTGTCTTGTGTTTCTGATACCGGATTTGGAGAAG 1498
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1433 CATCTTATGCGTCTGGTTGCTCAGACGTGTCTTGTGATTCTGATACCGGATTTGGAGAAG 1492
Query 1499 CTGTTGCCATCGCCAAGGGAGCGGATTTTGTCATAGTAGTTGCAGGATTAGATCTCTCTC 1558
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CTGTGGCCATCGCCAAGGGAGCGGATTTTGTCATAGTAGTTGCAGGATTAGATCTCTCTC 1552
Query 1559 AAGAAACCGAGGATAAGGATCGATTTAGTCTTTCTTTGCCTGGTAAACAGAAAGATCTTG 1618
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1553 AAGAAACCGAGGATAAGGATCGAGTTAGTCTTTCTTTGCCTGGTAAACAGAAAGATCTTG 1612
Query 1619 TGTCTTC-TGTTGCAGCTGTGAGCAAAAAACCAGTGATTCTTGTTCTAACCGGTGGAGGA 1677
||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1613 TGTCT-CATGTTGCTGCTGTGAGCAAAAAACCGGTGATTCTTGTTCTAACCGGTGGAGGA 1671
Query 1678 CCAGTGGATGTGACGTTTGCTAAAACTGACCCAAGAATCGGAAGCATCATCTGGATTGGT 1737
||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1672 CCAGTGGATGTAACGTTTGCTAAAAATGACCCGAGAATCGGAAGCATTATCTGGATTGGT 1731
Query 1738 TATCCAGGTGAAACCGGTGGACAAGCACTAGCTGAAATCATATTTGGAGACTTCAATCCA 1797
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1732 TATCCAGGTGAAACTGGTGGACAAGCACTCGCTGAAATCATATTTGGAGACTTCAATCCA 1791
Query 1798 GGTGGAAGATTACCGATAACGTGGTATCCCGAGTCCTTCACGGATGTTCCAATGTCGGAT 1857
||||| |||||||||| |||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1792 GGTGGTAGATTACCGACAACGTGGTATCCGGAGTCATTCACGGATGTGGCAATGTCGGAT 1851
Query 1858 ATGCACATGAGAGCCGATTCATCTCGTGGATATCCGGGAAGAACATACAGATTCTATACC 1917
||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1852 ATGCACATGAGAGCCAATTCATCTCGTGGATATCCAGGAAGAACGTACAGATTCTATACC 1911
Query 1918 GGACCTCAAGTTTACAGTTTTGGAACTGGTTTAAGCTACACGAAATTCGATTACAAGATC 1977
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1912 GGACCTCAAGTTTACAGTTTTGGGACCGGTTTAAGCTACACGAAATTCGAGTACAAGATC 1971
Query 1978 ATATCAGCACCAATCAGACTTAGCTTATCAGAACTTCTTCCACAACAGTCTTCTCACAAG 2037
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1972 TTATCAGCACCAATCAGACTTAGCTTATCGGAACTTCTTCCACAACAGTCTTCTCACAAG 2031
Query 2038 AAACAACTACTGCAACACGGAGAAGAACAGCTCCGATACATACAGCTCGATGATGTGATG 2097
|||||||||| |||| |||||||||| || ||||| |||||||||||||||||||
Sbjct 2032 AAACAACTAC---AACATGGAGAAGAACT--TC-GATACTTACAGCTCGATGATGTGATT 2085
Query 2098 GTTAACTCTTGCGAATCTATGCACTTTAATGTTCGGGTTAACGTGAGAAATACGGGAGAA 2157
|||||||||||||||||| ||| ||||| ||||| ||| | ||||| ||||| ||||||
Sbjct 2086 GTTAACTCTTGCGAATCTCTGCGGTTTAACGTTCGTGTTCATGTGAGCAATACCGGAGAA 2145
Query 2158 ATCGACGGTAGTCATGTTCTGATGCTGTTTTCGAAAATGGCTCGGGTTTTGTCTGGAGTT 2217
|||||||||||||||||| |||||||||||||||||||| | | |||||| ||||| |||
Sbjct 2146 ATCGACGGTAGTCATGTTGTGATGCTGTTTTCGAAAATGCCACCGGTTTTATCTGGTGTT 2205
Query 2218 CCGGAGAAGCAGCTGATTGGATT-TGATCGTGTTCATGTTCGTTCCAGTGAGATGATCGA 2276
|||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||| ||
Sbjct 2206 CCGGAGAAGCAGCTGATTGG-TTATGATCGTGTTCATGTTCGTTCCAATGAAATGATGGA 2264
Query 2277 AACAGAGTTCGTGATCGATCCTTGCAAGCAGCTAAGCGTAGCGAATGATGTCGGGAAGAG 2336
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 AACAGTGTTCGTAATCGATCCTTGCAAGCAGCTAAGCGTAGCGAATGATGTCGGGAAGAG 2324
Query 2337 AGTGATTCCTCTGGGGATTCATGCCTTGTTCTTGGGAGATTTACAACATTCTCTATCTGT 2396
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 2325 AGTGATTCCTCTGGGGAGTCATGTCTTGTTCTTGGGAGATTTACAACATTCTCTCTCTGT 2384
Query 2397 TGAATTCTAAACAAAACTGTAATCCGGAAAAA 2428
||||||||||| | | |||||||||| |||||
Sbjct 2385 TGAATTCTAAA-ACA-CTGTAATCCGAAAAAA 2414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120581709090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5