BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487890
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1399 0.0
> AT5G10570.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:3341357-3342992 FORWARD LENGTH=1063
Length=1063
Score = 1399 bits (757), Expect = 0.0
Identities = 901/969 (93%), Gaps = 15/969 (2%)
Strand=Plus/Plus
Query 1 ATGGAAATGGAACTGACTCGATCGACAAAACAAGAAAGCAACAATCTCGACGTCATTAAT 60
||||||| |||| |||| | || || |||||||||||||||||||||| ||| | |||||
Sbjct 1 ATGGAAACGGAATTGACGCAATTGAGAAAACAAGAAAGCAACAATCTCAACGGCGTTAAT 60
Query 61 GGAGGATTCATGGCGGTTGACCAATTCGTCCCAAATGATTGGAACTTCGATTACCACTAT 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 61 GGAGGATTCATGGCGATTGACCAATTCGTCCCAAATGATTGGAACTTCGATTACCTCTGT 120
Query 121 TTCAACAATCTTCTCCAAGAAGACGACAACATTGATCAT-C--CTTCTTCTTCTTTGATG 177
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 TTCAACAATCTTCTCCAAGAAGACGACAACATTGATCATCCTTCTTCTTCTTCTTTGATG 180
Query 178 AATCTAATCTCTCAGCCGCCTCCATTACTTCACCAACCACCACAACCGTCGTCACCTC-C 236
|||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 AATCTAATTTCTCAGCCACCTCCATTGCTTCATCAACCACCACAACCGTCGTCACCTCTT 240
Query 237 T-T-ATTCTCTGCCGCTCTCCTCCGCTTTCGACTATCCTTTTCTCGAGGATATCAAAGAC 294
| | |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 TATGATTCTCCGCCGCTCTCCTCCGCTTTCGACTATCCTTTTCTCGAGGATATCATACAC 300
Query 295 TCCTC-TCTCTCTCATCCTCCATTTATTCTTCCGACTTCACAAGAGAACAACATCAACAA 353
||||| | | |||| ||||||||| || |||||| |||| ||||||||| || ||||||
Sbjct 301 TCCTCTTAT-TCTCCTCCTCCATTGATCCTTCCGGCTTCGCAAGAGAAC-AC--CAACAA 356
Query 354 TTACTCACCATCGATGGAGGAAAGCAAGAGCCTCATGAA-CTA-CGGAGAGACTAACAAG 411
||||||||||| ||||||||||||||||||| |||| || | | ||||||||||||||||
Sbjct 357 TTACTCACCATTGATGGAGGAAAGCAAGAGCTTCAT-AAGC-ATCGGAGAGACTAACAAG 414
Query 412 AAAAAGAGTAATAAGAAGCTTGAAGGTCAACCTTCGAAGAATCTCATGGCAGAGAGACGG 471
|||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 415 AAAAGGAGTAACAAGAAGCTTGAAGGTCAGCCTTCGAAGAATCTTATGGCGGAGAGACGG 474
Query 472 CGGAGGAAACGGTTAAATGACCGACTCTCTATGCTCCGATCCATTGTCCCTAAAATCACC 531
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 475 CGGAGGAAACGGTTAAATGACCGACTCTCCCTGCTCCGATCCATTGTCCCTAAAATCACC 534
Query 532 AAGATGGATAGGACATCGATACTAGGAGATGCAATAGATTACATGAAGGAGCTTTTGGAC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAGATGGATAGGACATCGATACTAGGAGATGCAATAGATTACATGAAGGAGCTTTTGGAC 594
Query 592 AAGATTAACAAGTTGCAAGATGCCGAACAAAAATTTGGAAGCAACTCCCATCTAAATAAC 651
|||||||||||||||||||| | ||||||| || ||||||||||||| ||||||| | |
Sbjct 595 AAGATTAACAAGTTGCAAGAAGACGAACAAGAACTTGGAAGCAACTCTCATCTAAGCACC 654
Query 652 CTCATTACAAACAAATCTATGGTCAGAAACTCCCTAAAGTTTGAAGTAGATCAAAGGGAA 711
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTCATTACAAACGAATCTATGGTCAGAAACTCCCTAAAGTTTGAAGTAGATCAAAGGGAA 714
Query 712 GTTAATACACATATTGATATATGTTGTCCTACGAAACCGGGTTTGGTTCTATCAACGGTT 771
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 GTTAATACGCATATTGATATATGTTGTCCTACGAAACCGGGTTTGGTTGTATCAACGGTT 774
Query 772 AGTACATTGGAGAATCTAGGCTTAGAGATTCAACAATGTGTCATTAGCTGCTTCAGTGAC 831
||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 775 AGTACATTGGAGACTCTAGGATTAGAGATTGAACAATGTGTCATTAGCTGCTTCAGTGAC 834
Query 832 TTCTCATTGCAGGCTTCTTGTTTTGAGGTTGGTGGGCAGAGAGACATGGTTACTTCGGCA 891
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 835 TTCTCATTGCAGGCTTCTTGTTTTGAGGTTGGTGAGCAGAGATACATGGTTACTTCGGAA 894
Query 892 GATACTAAACAAGCACTAATCAGAAACGCAGGTTATGGAGGAAGATGTCTGTAGGGGAGC 951
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTACTAAACAAGCACTAATCAGAAACGCAGGTTATGGAGGAAGATGTCTGTAGGGGAGC 954
Query 952 TTCAAAATT 960
|||||||||
Sbjct 955 TTCAAAATT 963
Score = 93.5 bits (50), Expect = 4e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 958 ATTTTCCGGTTCTTTTTATTCTCTTGTGATGAGTATGATATTTCTTAAGGAGATAG 1013
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 988 ATTTTCCGGTTCTTCTTATTCTCTTGTGATGAGTATGATATTTCATAAGGAGATAG 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5