BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487891
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10580.1 | Symbols: | Protein of unknown function, DUF599 |... 1463 0.0
> AT5G10580.1 | Symbols: | Protein of unknown function, DUF599
| chr5:3347421-3348734 FORWARD LENGTH=908
Length=908
Score = 1463 bits (792), Expect = 0.0
Identities = 838/861 (97%), Gaps = 0/861 (0%)
Strand=Plus/Plus
Query 10 AAGAAAGAAAGAGAAGATTATATACATAGAAAAAGAGAGATCAAATGGAGTGGGAGAAAT 69
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 47 AAGAAAGAAAGAGAAGATTATATACATAGAAAAGGAGAGATCAAATGGAGTGGGAGAAAT 106
Query 70 GGTACTTAGATGCGGTTCTTGTGCCATGTGCTCTACTTATGATGTTTAGTTACCACATCT 129
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 107 GGTACTTAGATGCGGTTCTTGTGCCAAGTGCTTTACTTATGATGTTTGGTTACCACATCT 166
Query 130 ACTTGTGGTATAAGGTTCAAACCGATCCTTTCTGCACCATCGTCGGGACTAATTCCCGCG 189
| |||||||||||||||| ||||||||||||||||||||| || || || ||||||||||
Sbjct 167 ATTTGTGGTATAAGGTTCGAACCGATCCTTTCTGCACCATTGTTGGTACAAATTCCCGCG 226
Query 190 CCCGTCGATCTTGGGTAGCCGCCATCATGAAGGATAACGAGAAGAAGAACATCTTAGCGG 249
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 227 CCCGTCGATCTTGGGTAGCAGCCATCATGAAGGACAACGAGAAGAAGAACATCTTAGCGG 286
Query 250 TACAAACACTACGAAACACGATAATGGGAGGGACGTTAATGGCAACCACTTGCATCCTCC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TACAAACACTACGAAACACGATAATGGGAGGGACGTTAATGGCAACCACTTGCATCCTCC 346
Query 310 TCTGCGCAGGCCTCGCTGCCGTTTTAAGCAGTACTTATAGCATCAAGAAACCTTTAAACG 369
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TCTGCGCAGGTCTCGCTGCCGTTTTAAGCAGTACTTATAGCATCAAGAAACCTTTAAACG 406
Query 370 ACGCCGTATACGGAGCTCATGGTGACTTCACTGTCGCACTCAAATACGTAACCATCCTCA 429
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 407 ACGCCGTATATGGAGCTCATGGTGACTTCACTGTTGCACTCAAATACGTAACCATCCTCA 466
Query 430 CAATCTTCCTCTTCGCCTTCTTCTCTCATTCTCTCTCCATTCGCTTCATCAACCAAGTCA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CAATCTTCCTCTTCGCCTTCTTCTCTCATTCTCTCTCCATTCGCTTCATCAACCAAGTCA 526
Query 490 ACATCCTTATTAACGCTCCTCAAGAACCTTTTTCTGATGGTTTCGGCGAAATTGGAAGCT 549
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 527 ACATCCTTATTAACGCTCCTCAAGAACCTTTTTCTGATGATTTCGGCGAAATAGGAAGCT 586
Query 550 TTGTGACTCCCGAGTATGTCTCTGAACTACTCGAGAAAGCTTTCTTGCTCAATACGGTAG 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTGTGACTCCCGAGTATGTCTCTGAACTACTCGAGAAAGCTTTCTTGCTCAATACGGTAG 646
Query 610 GTAATAGGCTGTTCTACATGGGCTTGCCTTTGATGCTGTGGATCTTTGGGCCTGTGCTTG 669
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 647 GTAATAGGCTGTTCTACATGGGCTTGCCTTTGATGCTATGGATCTTTGGGCCTGTGCTTG 706
Query 670 TGTTCTTGAGCTCTGCTTTGATAATCCCTGTTCTTTATAACCTCGACTTCGTGTTTTTGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TGTTCTTGAGCTCTGCTTTGATAATCCCTGTTCTTTATAACCTCGACTTCGTGTTTTTGT 766
Query 730 TGAGCAATAAGGAGAAGAGTAAAGTCGATTGCAATGGAGGTTGTGATGACAACTTCTCGC 789
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGAGCAATAAGGAGAAGGGTAAAGTCGATTGCAATGGAGGTTGTGATGACAACTTCTCGC 826
Query 790 CTTGATTATCTGTTGATGTTTAATTCGAGTAATGATAAAGATGTTTGTTATTACTGATTT 849
||| |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct 827 CTTAATTATCTGTTGATGTTGAATTCGAATAATGATAAAGCTGTTTGTTATTACTGATTT 886
Query 850 ACTAGTCTAAAAAGTCTTTCG 870
|||||||||||||||||||||
Sbjct 887 ACTAGTCTAAAAAGTCTTTCG 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5