BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487893

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10590.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   381    2e-105


> AT5G10590.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:3349134-3349468 
REVERSE LENGTH=243
Length=243

 Score =  381 bits (206),  Expect = 2e-105
 Identities = 227/237 (96%), Gaps = 1/237 (0%)
 Strand=Plus/Plus

Query  11   CTATTTCAGATGTTCAAATTCACTGGCGCAAAAAAGATTACTTATCGATGAGCTTGTTGG  70
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  8    CTATTTCAGATGTTCAAATTCACTGGCGCAAAAAAGATTACTTATCGATGAGCTTGTTGG  67

Query  71   AAGATTTTGATATAGCAGAGTCTAAGGTAAAGGAACATAGCGTAAACGATCAAATAATTG  130
            | ||||||| ||| |||||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct  68   ATGATTTTGGTATTGCAGAGACTACGGTTAAGGAACATAGCGTAAACGATCAAATAATTG  127

Query  131  TCACACTCTCAGCAGATCATCGCGTAAGAATGATTATCCGTTATAAAATGGATGAATCGC  190
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  128  TCACACTCTCAGCAGATCATCGCGTAAGAATGATTATCCGTTATGAAATGGATGAATCGC  187

Query  191  ATATACCAATGATCAAAAACTTGGTGATCCGCGCTTTCGTCATTGGCATCCAAATAA  247
            |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||
Sbjct  188  ATATACCAATGATCAAAAACTTGGTGATCCGCGCTTTCTTCATTGG-ATCCCAATAA  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5