BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487896
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10620.1 | Symbols: | methyltransferases | chr5:3355320-335... 1066 0.0
AT5G10605.1 | Symbols: | methyltransferases | chr5:3352898-335... 211 7e-54
> AT5G10620.1 | Symbols: | methyltransferases | chr5:3355320-3356615
REVERSE LENGTH=728
Length=728
Score = 1066 bits (577), Expect = 0.0
Identities = 671/715 (94%), Gaps = 12/715 (2%)
Strand=Plus/Plus
Query 1 ATGGCCATTTCTCAATTGAATAAGCTATATGCATCTGCTTCTCCTACTTCTCAGGAAACA 60
||||||| |||||| ||||| ||| |||||||||||||||||||||| ||||||||| |
Sbjct 16 ATGGCCAATTCTCACCTGAATCAGCCATATGCATCTGCTTCTCCTACTCCTCAGGAAAAA 75
Query 61 GGAAGAACGTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GGAAGAACTTGTAGATACGCGGGTCAAGCAGTGAGAGCTCTTCCTATACGAGTAATAACA 135
Query 121 GTTGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAAACAAGCTT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 136 GTGGGGAAAAAGAGATCAGAAGGTGTTCGACTCTTGGTCGATGAATACAAAATCAAGCTT 195
Query 181 AAACCTTATTGCTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 240
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AAACCTTACTGTTCCTTTGAAGATTCATTGGTTCGCTCCAATCCTCGAAATGCTCAGGAT 255
Query 241 GTTAGAGCCCAGGTTGAGGATGAAGAGGTGGCTATGATGAAGATTATTGGGTCTGATGAT 300
|||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 256 GTTAGAGCTCAGGTCGAGGATGAAGAAGTGGCTATGATGAAGCTTATTGGGTCTGATGAT 315
Query 301 TGGGTTGTGGTGCTTGACGAGAGAGGCCGTGACATTGATTCAGAGGCA-ATGGCTGAGTT 359
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 316 TGGGTTGTGGTGCTTGACGAGAGAGGCCGCGACATTGATTCAGAG-CAGATGGCTGAGTT 374
Query 360 ACTAGGGGATGCAGGAAATAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 419
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ACTTGGGGATGCAGGAAACAGTGGAGCTTCGCGGATCTCGTTTTGTATAGGTGGAGCTTA 434
Query 420 TGGACATGGAA-GACAAGTGAGGAAGCGAGCGAATGTGACCATTAGACTTTCCTCCATGG 478
|||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 CGGACATGGAACG-CAAGTGAGGAAGCGAGCTAATGTGACCATTAGACTTTCCTCCATGG 493
Query 479 TCCTGAATCATCAGATTGCTCTTGTGGTGCTGATGGAACAGCTTTACAGGTCATGGACTA 538
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 494 TCCTGAATCATCAGATAGCTCTTGTGGTGCTCATGGAACAGCTTTACAGGTCATGGACTA 553
Query 539 TTCTCAAGGGACAAAACTACCATCACTGATGATGCATGAATCTCTACTTTTTGG--TTGC 596
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |
Sbjct 554 TTCTCAAGGGACAAAATTACCATCACTGATGAGGCATGAATCTCTACTTTTTGGGATTTC 613
Query 597 TTT------ATCGTGTACAAAGAAGCTGCATTGCTAAAAAGCTTCTCTGCTGATAGTTGT 650
||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 614 TTTTGCTCTATCGTGTACAAAGAAACTGCATTGCTAAAAAGCTTCTCTGCTGGTAGTTGT 673
Query 651 ATGAGAAATTGTATATTGTACGACGGAAGTTTGCTATCCAAATTTGTTTGCTTCT 705
|||||||||||| |||||||||||| | |||||| ||||||||||||||||||||
Sbjct 674 ATGAGAAATTGTTTATTGTACGACGTATGTTTGCAATCCAAATTTGTTTGCTTCT 728
> AT5G10605.1 | Symbols: | methyltransferases | chr5:3352898-3353392
REVERSE LENGTH=256
Length=256
Score = 211 bits (114), Expect = 7e-54
Identities = 142/155 (92%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 382 GGAGCTTCGCGGATCTCGTTTTGTAT--AGGTGGAGCTTATGGACATGGAAGACAAGTGA 439
|||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 65 GGAGCTTCACGGATATCGTTTTGTATAAAGGTGTAGCTTATGGACATGGAAGACAACTGA 124
Query 440 GGAAGCGAGCGAATGTGACCATTAGACTTTCCTCCATGGTCCTGAATCATCAGATTGCTC 499
|||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 125 GGAAGCGAGCTAATGTGGCCATTAGACTTTCCTCCATGGTCCTGAATCATCATATAGCTC 184
Query 500 TTGTGGTGCTGATGGAACAGCTTTACAGGTCATGG 534
||||||| ||||||||| ||||||||||||| |||
Sbjct 185 TTGTGGTACTGATGGAATAGCTTTACAGGTC-TGG 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5