BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487906
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10700.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 904 0.0
AT5G10695.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 69.4 4e-11
> AT5G10700.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr5:3378053-3378867 REVERSE LENGTH=603
Length=603
Score = 904 bits (489), Expect = 0.0
Identities = 558/592 (94%), Gaps = 2/592 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGCGCCGTGATCTCCGCAGCGTTTCGACTCCCGATCGTTACCCGCCGACTCTCT 60
||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1 ATGGCGACCGCCGTCCTCTCCGCAGCGTTTCGATTCCCGATAGTTACCCGCCGACTCTCT 60
Query 61 GCTCCGGCGCCGCGAATTAGGTTTTCTCATTCCACGATCCGAATTGCTCATCCCCGAAGA 120
||||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||
Sbjct 61 GCTCCGGCGCCGCGAATTAGGTTTTATCATTCTACGATCCGATTTGCTCATTTCCGAAGA 120
Query 121 TTCACAACGGCTGCTTCTTCAATGAGCCAACAGA-TGGGAGAAATCGGTGCCGTCGTCGA 179
|||||||||||| || ||||||||||||| |||| | || ||||||| ||||||||||||
Sbjct 121 TTCACAACGGCTTCTCCTTCAATGAGCCAGCAGACT-GGCGAAATCGATGCCGTCGTCGA 179
Query 180 TGCTTCCTCGGCGGAGAAACCCGACGACGTCGTTGTGCAGTACGTTGTGCTTCGGCGAGA 239
|||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 180 TGCTTCGTCGGCGGAGAAACCCGACGACGTCGTGGTGCAATACGTTGTGCTTCGACGAGA 239
Query 240 TCTAATCGATTCGTGGCCACTAGGGAGCGTTGTAACACAGGGATGTCATGCGTCAGTGGC 299
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCTAATCGATTCGTGGCCACTTGGGAGCGTTGTAACACAAGGATGTCATGCGTCAGTGGC 299
Query 300 GGCGATCTGGTCGTTCAAAGACGACCCGGTCACTCTTCAGTACTGTGATCCGCAGCACAT 359
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 300 AGCGATCTGGTCGTTCAAAGACGATCCGGTCACGCTTCAGTACTGTGATCCGCAGCACAT 359
Query 360 TGATTCTATGCATAAGGTGACTCTTGAGGTTAAAGGGGAAACGCAGATGATGAATTTGTC 419
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 360 TGATTCTATGCATAAGGTGACTCTGGAAGTTAAAGGGGAAACGCAGATGATGAATTTGTC 419
Query 420 AGAGAAGCTGAAATTAGGAGGAATCTCTCATAAGCTATGGATGGAGCAGCCGGAGAATAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGAAGCTGAAATTAGGAGGAATCTCTCATAAGCTATGGATGGAGCAGCCGGAGAATAT 479
Query 480 ACCGACGTGTATCGCCACGAAGCCTTATCATAAATCTCAAGTCTCTTCTTTCTTCAAAAA 539
||||||||||| || || |||||||||| |||||| |||||||||||||||||||||||
Sbjct 480 TCCGACGTGTATTGCTACAAAGCCTTATCCTAAATCCCAAGTCTCTTCTTTCTTCAAAAA 539
Query 540 GCTCAAGCTTTGCAAAAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTCAAGCTTTGCAAAAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 591
> AT5G10695.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G57123.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:3377663-3378221 FORWARD LENGTH=559
Length=559
Score = 69.4 bits (37), Expect = 4e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Minus
Query 555 AAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 591
|||||||||||||||||||||||||||||||||||||
Sbjct 439 AAACACGATACACAAAGCAAGTCAGAGATTTGGATAT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28432527202
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5