BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487907
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10710.2 | Symbols: | INVOLVED IN: chromosome segregation, ... 1657 0.0
> AT5G10710.2 | Symbols: | INVOLVED IN: chromosome segregation,
cell division; LOCATED IN: chromosome, centromeric region,
nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere
protein Cenp-O (InterPro:IPR018464); Has 43 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
11; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink). | chr5:3379144-3382779 FORWARD LENGTH=1170
Length=1170
Score = 1657 bits (897), Expect = 0.0
Identities = 1068/1147 (93%), Gaps = 25/1147 (2%)
Strand=Plus/Plus
Query 95 TCCGGCGCTGCTTAAACCATCTCTCACCG-CTAATCTGATCTGTTATCATCTCTACTCGT 153
|||||||||||||||||| |||||| || || |||||||||||||| ||||||||| |
Sbjct 1 TCCGGCGCTGCTTAAACCGTCTCTCGTCGCCT-GTCTGATCTGTTATCTTCTCTACTC-T 58
Query 154 -CGGCGTC--G-TT-G-----AGA--GCTTGGT---C--AA-CTGGGAGAAATGATTGTT 195
||| ||| | || | ||| |||| | | || |||||||||||||||||
Sbjct 59 CCGGTGTCGAGCTTGGTCAAAAGACCTCTTGATAAGCAAAATATGGGAGAAATGATTGTT 118
Query 196 TCGCTGGACCAAGATATCCGACTGGATTCAACACGAGCAAGATTGTCAAATCTTCTCAAG 255
|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 119 TCAATGGACCAAGATATCCGACTGGATACAACACGAGCAAGATTGTCAAACCTTCTCAAG 178
Query 256 AGGCATCGAGAATTGTCAGACCGTCTTACTAGGGATTCTGATAAGACAATATTAGATCGG 315
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 AGGCATCGAGAATTGTCAGACCGTCTTACTAGGGATTCTGATAAGACAATGTTAGATCGC 238
Query 316 TTAAACAAAGAGTTTGAAGCTGCACGGAGATCCCAAAGTCAGGAAGTCTTCTTAGATGGG 375
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TTAAACAAAGAATTTGAAGCTGCACGGAGATCCCAAAGTCAGGAAGTCTTCTTAGATGGG 298
Query 376 GAAGAGTGGAATGATGGTTTGTTGGCCACGCTGAGGGAACGGGTGCATATGGAAGCTGAC 435
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 299 GAAGAGTGGAATGATGGTTTGTTGGCCACATTAAGGGAACGGGTGCATATGGAAGCTGAC 358
Query 436 AGAAAGGCAGATAACGGTAATGTAAGTTTTGCACTACTTTGTCATCCTGAAGAACGAGTT 495
|||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||| ||
Sbjct 359 AGAAAGGCAGATAACGGTAATGCAGGTTTTTCACTAGTTTGTCATCCTGAAGAACGAATT 418
Query 496 ACTTACAGAGTGGGAAATAAGGTGATATGTTGCCTAGATGGATCGAGAATTGGAATACAG 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTTACAGAGTGGGAAATAAGGTGATATGTTGCCTAGATGGATCGAGAATTGGAATACAG 478
Query 556 TATGAAACACCAACTATAGGAGAAACTTACGAGGTTTTCCACTGTGTGCTTGAGAGCAAG 615
| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 TTTGAAACATCTACTGCAGGAGAAACTTACGAGGTTTACCACTGTGTGCTTGAGAGCAAG 538
Query 616 TCGTTTTTGGAGAAGATGATTGTACTTGAGCACACAATTCCTTTCTTTTTGCCACTACGT 675
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 539 TCGTTTTTGGAGAAGATGATTGTGCTTGAGCACACAATTCCTTTCTTTTTGCCGCTAAGT 598
Query 676 GACTTGGAAAATGATCTTCTTTGTTCGAATGCTAAGAAATTCATCGATAATGTTGGGGAT 735
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 GACTTGGAAAATGATCTTCTTTTTTCGAATGCTAAGAAATTCATCGATAATGTTGGGGAT 658
Query 736 CTCCTGCAAGCATATGTGGACAGAAAGGAACAGGTCCGGGTTATCAAAGAGCTCTATGGA 795
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 659 CTCCTGCAAGCATATGTGGACAGAAAGGAACAGGTCCGGCTTATCAAAGAGCTCTTTGGA 718
Query 796 AATCAGATCAGTGAGATTTATCACAGTCTTCCTTACCACATGATTGAATTTTCCATGGAT 855
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 CATCAGATCAGTGAGATTTATCACAGTCTTCCTTACCACATGATTGAATTTTCTATGGAT 778
Query 856 GATTGTGACTGCAAATTCGTGGTGAGCCTTAGATATGGAGATCTTCTGTGTGAACTTCCG 915
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GATTGTGACTGCAAGTTCGTGGTGAGCCTTAGATATGGAGATCTTCTGTGTGAACTTCCG 838
Query 916 ACAAAAGTGAGGATTCTAGTTTGGCCAATGCATCATCATCAGTCGAAGAAACAGTGTACA 975
||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 839 ACAAAAGTGAGAATTCTAGTATGGCCAATGCATCATC-T--GTCGAAGAAACAGTGTACA 895
Query 976 AGCCCTGGAAGTCAAGCAATCCCTGTGCGTTTATCATTTGCCGAGGATGCTTTCCGGATC 1035
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 896 AGCCCTGGAAGTCCAGCAATCCCTGTGCGTTTACCATTTGCCGAGGATGCTTTCCGGATC 955
Query 1036 CAATCACTACCTGAAGCATACGCAGAGATTATGCAGAACATGCCGAATGAAATTCAGCAA 1095
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 956 CAATCACTACCTGAAGCATACGCAGAGATTATGCCGAACATGCCGAATGAAATTCGGCAA 1015
Query 1096 CTATTTCAGAGAAGTCCAAGCTAAAAGCTGAAGCTGTGTGCAAACTTTCTATTTCTCTCA 1155
||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1016 TTATTTCAGACTAGTCCAAGCTAAAAGTTGAAGCTGTGTGCAAACTTTCTACTTGTCTC- 1074
Query 1156 GCTGCTTCGTTGTATGATGTTTGATATTGATCCTTGTTCCAAACTGTTAAAATAGTGCTA 1215
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTGCTTCGTTGTATGATGTTTGATTTTGATCCTTGTTCCAAACTGTTAAAATAGTGCTA 1134
Query 1216 CGAAGAA 1222
||||||
Sbjct 1135 TGAAGAA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5