BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487908
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10740.1 | Symbols: | Protein phosphatase 2C family protein... 1773 0.0
AT5G24940.1 | Symbols: | Protein phosphatase 2C family protein... 998 0.0
> AT5G10740.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:3393569-3396200 REVERSE LENGTH=1537
Length=1537
Score = 1773 bits (960), Expect = 0.0
Identities = 1184/1284 (92%), Gaps = 48/1284 (4%)
Strand=Plus/Plus
Query 1 TATTTTTAGCAAATGAATCCATTTGTTCGCCGGAATATGCTCCCTTCTCTTAACGTCGAT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATTTTTAGCAAATAAATCCATTTGTTCGCCGGAATATGCTCCCTTCTCTTAACGTCGAT 60
Query 61 CACCTG------------------t-t-t-tttttCTCAAGTAGGAATCAACCTTGAATC 99
|||||| | | | |||||||||| |||||||||||| ||||||
Sbjct 61 CACCTGTTTTTCTCTTTCCCTCTCTCTCTATTTTTCTCAACTAGGAATCAACCATGAATC 120
Query 100 TCCCATCATTCTCACTTCTCTCTTCTAATTCTTTCATGGAATTTTGAGGTTAGACGAACA 159
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 121 TCCCATCATTCTCACTTCTCTCTTCTAATTCTTTCATGGAATTTTCAGGTTAGAAGAAGA 180
Query 160 TTCCGGGCATATTATCTGTTGATTCGAAG-AT------TA-GAGTTTGAAATTTCTGAAG 211
||||||||| ||||||||||||||||||| || || | |||||||||||||||||
Sbjct 181 TTCCGGGCAGATTATCTGTTGATTCGAAGAATACCGAATACGCGTTTGAAATTTCTGAAG 240
Query 212 AAATATGGGATATC-TGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGACG 270
|| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 AATTATGGGATA-CTTGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGAAG 299
Query 271 CTCCAGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCCAGCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCT 359
Query 331 CAGCTGGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATG 390
| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 360 CCGCTGGCAAGAGATCATCTATGGAAGACTTTTTTGAAACTAGGATCGACGGTATCAATG 419
Query 391 GAGAAATCGTTGGTCTCTTTGGAGTTTTTGATGGTCATGGTGGAGCCAGAGCAGCTGAGT 450
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GAGAAATAGTTGGTCTATTTGGAGTTTTTGATGGCCATGGTGGAGCCAGAGCAGCTGAGT 479
Query 451 ACGTGAAGCGTCATCTTTTCAGTAATCTCATCACCCACCCAAAGTTTATCTCTGACACCA 510
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 ACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCA 539
Query 511 AATCAGCTATAACTGATGCCTATAACCATACAGACTCAGAACTTCTTAAGTCAGAAAATA 570
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 540 AATCAGCTATAACTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATA 599
Query 571 GTCACAATAGAGACGCTGGTTCGACTGCGTCTACAGCTATTCTTGTTGGTGACCGCTTAG 630
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 600 GTCACAATAGAGACGCTGGTTCTACTGCGTCTACAGCTATTCTTGTTGGTGACCGTTTAG 659
Query 631 TTGTTGCAAATGTTGGTGATTCAAGAGCTGTTATCAGCAGAGGCGGAAAAGCCATTGCTG 690
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTTGCAAATGTTGGTGATTCTAGAGCTGTTATCAGCAGAGGCGGAAAAGCCATTGCTG 719
Query 691 TGTCAAGGGACCATAAACCTGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTG 750
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTG 779
Query 751 GATTTGTGATGTGGGCAGGAACTTGGAGGGTTGGAGGAGTTCTTGCAGTTTCTCGTGCGT 810
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 780 GATTTGTGATGTGGGCAGGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGT 839
Query 811 TTGGTGATCGGCTTCTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGGTGATCGGCTTCTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 899
Query 871 TTGATGATTCCCTTGAGTTTTTGATCCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 930
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 TTGATGATACTCTTGAGTTTTTGATTCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 959
Query 931 ATGAGGCAGCAGTTGCAATGGTTAAGGAAGTTGAAGATCCAGAGGAGTCAGCGAAGACAC 990
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | ||
Sbjct 960 ATGAGGCAGCAGTTGCAATGGTAAAGGAAGTTGAAGATCCCGAGGACTCAGCGAAAAAAC 1019
Query 991 TTGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGACAACATCACATGTGTTGTCGTTCGTT 1050
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TGGTGGGTGAAGCAATAAAGAGAGGAAGTGCAGATAACATCACATGTGTTGTCGTTCGTT 1079
Query 1051 TCTTGGAGAAGAAGACAGCTTCATCAAGCCACATTAGCTCATCCTCCTCCAAGGAAGCCA 1110
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TCTTGGAGAAGAAGTCAGCTTCATCAAGCCACATTAGCTCTTCCTCCTCCAAGGAAGCCA 1139
Query 1111 ATGAAATGCCGCCACTTGGAGACCTCGCTATCTCGTCCAATGAAGCTACCCAAGTCCAAA 1170
| |||||||| |||||||||||||| |||||||| || |||||||||| ||||||||
Sbjct 1140 AGGAAATGCCTCCACTTGGAGACCTTGCTATCTCATCGAATGAAGCTAAGCAAGTCCA-- 1197
Query 1171 TCGACTCAGAGAATATCAGCTCAGGGAACAAACCAGAGAATGTAATGAATCGAAAACCTG 1230
|| || | | | ||||||||||||||||||||||||| |||||||||||| |
Sbjct 1198 --GA-TC-G-G-----C---TCAGGGAACAAACCAGAGAATGTAACGAATCGAAAACCGG 1244
Query 1231 TCCCTGCAAG-CAGCTTAACCGAT 1253
| ||||||| | ||| ||| |||
Sbjct 1245 ACACTGCAAGTC-GCTCAACTGAT 1267
Score = 178 bits (96), Expect = 1e-43
Identities = 198/241 (82%), Gaps = 32/241 (13%)
Strand=Plus/Plus
Query 1318 CAGTGACCGACAAGGTATAAGTAGCGATTCCCTCTATTCTCTAGGAAC--AA-A-AGCGT 1373
|||||||||||||||||||| ||||||||||||||||||||||||||| || | || ||
Sbjct 1290 CAGTGACCGACAAGGTATAAATAGCGATTCCCTCTATTCTCTAGGAACTAAAGACAGTGT 1349
Query 1374 TCTCTTCCCTCAAACACGGCAAACAAACTTACTGATCGTTGATCTCGTTTGTATTTAC-- 1431
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1350 TCTCTTCCCTCAAACACGGCAAACAAACTTACTGATCGTTGATCGCGTTTGCATTTAGGA 1409
Query 1432 T--A---T-T-T--AG---GATTG----AAG---ATG-TT--GT--GTATATA-ATA-TA 1465
| | | | | | ||||| ||| ||| || || || | || ||| ||
Sbjct 1410 TTGAAGATGTATTTAATACGATTGTTTTAAGTTTATGATTACGTTTGTGTGTATATAATA 1469
Query 1466 CATGCATCGATTTTTGTATTTGTTTATGTGTAAATGTTTAAAAGTTCATGATAGTTTATT 1525
|||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1470 CATGCATCGACTTTTGTATTTGTTTATGTGTAAATGTTTTAAATTTCATGATAGTTTATT 1529
Query 1526 C 1526
|
Sbjct 1530 C 1530
> AT5G24940.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:8591407-8593601 REVERSE LENGTH=1344
Length=1344
Score = 998 bits (540), Expect = 0.0
Identities = 758/863 (88%), Gaps = 16/863 (2%)
Strand=Plus/Plus
Query 216 ATGGGATATCTGGACTTGGCCTTGTCGTATTCCAACCAGCCGCAGACTGTTGACGCTCCA 275
||||||||| |||||||||| || || ||||| || || || || |||||| |||||
Sbjct 1 ATGGGATATATGGACTTGGCGTTATCTTATTCGAATCAAATGCGGATTGTTGAAGCTCCC 60
Query 276 GCGAGCGGAGGAGGTCTCAGCCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 335
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAAGCGGAGGTGGTCTCAGTCAGAATGGAAAATTTAGCTATGGATATGCAAGCTCAGCT 120
Query 336 GGGAAGAGATCATCTATGGAAGACTTTTTTGAGACTAGGATCGACGGTATCGATGGAGAA 395
|| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GGAAAAAGGTCATCTATGGAAGACTTTTTTGAGACAAGGATCGACGGTATCGATGGAGAA 180
Query 396 ATCGTTGGTCTCTTTGGAGTTTTTGATGGTCATGGTGGAGCCAGAGCAGCTGAGTACGTG 455
||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 181 ATCGTTGGTCTATTTGGAGTCTTTGATGGTCATGGTGGATCCAGAGCAGCTGAGTATGTG 240
Query 456 AAGCGTCATCTTTTCAGTAATCTCATCACCCACCCAAAGTTTATCTCTGACACCAAATCA 515
|||||||| |||||||| ||||| || || || || ||||| |||||||||||||||||
Sbjct 241 AAGCGTCACCTTTTCAGCAATCTTATTACTCATCCTAAGTTCATCTCTGACACCAAATCT 300
Query 516 GCTATAACTGATGCCTATAAC-CATACAGACTCAGAACTTCTTAAGTCAGAAAATAGTCA 574
|| ||| |||||||||||| | ||||||||||| |||||||| |||||||||||||||||
Sbjct 301 GCAATAGCTGATGCCTATA-CTCATACAGACTCTGAACTTCTCAAGTCAGAAAATAGTCA 359
Query 575 CAATAGAGACGCTGGTTCGACTGCGTCTACAGCTATTCTTGTTGGTGACCGCTTAGTTGT 634
| |||||| |||||||| ||||| || ||||||||||| |||||||| || ||| ||||
Sbjct 360 TACTAGAGATGCTGGTTCAACTGCTTCCACAGCTATTCTCGTTGGTGATCGTTTACTTGT 419
Query 635 TGCAAATGTTGGTGATTCAAGAGCTGTTATCA-G-CAGAGGCGGAAAAGCCATT-GCTGT 691
||| |||||||||||||| ||||||||||| | | | | |||||||| || ||| |||||
Sbjct 420 TGCTAATGTTGGTGATTCCAGAGCTGTTAT-ATGTC-GTGGCGGAAATGC-ATTTGCTGT 476
Query 692 GTCAAGGGACCATAAACCTGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGG 751
||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 477 TTCAAGAGACCATAAACCTGACCAAAGTGATGAGCGTGAACGGATTGAGAATGCTGGTGG 536
Query 752 ATTTGTGATGTGGGCAGGAACTTGGAGGGTTGGAGGAGTTCTTGCAGTTTCTCGTGCGTT 811
||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||
Sbjct 537 TTTTGTGATGTGGGCAGGGACTTGGAGAGTTGGAGGAGTTCTTGCAGTTTCCCGCGCGTT 596
Query 812 TGGTGATCGGCTT-CTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGA 870
||||||||| || || || |||||||||||||||||||||||||| |||||||| ||||
Sbjct 597 TGGTGATCGA-TTGCTTAAACAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAGAAGA 655
Query 871 TTGATGATTCCCTTGAGTTTTTGATCCTAGCAAGTGATGGACTGTGGGATGTTTTCTCTA 930
|||||||||| ||||||||| |||| || || || |||||||| |||||||||||||| |
Sbjct 656 TTGATGATTCTCTTGAGTTTCTGATTCTTGCCAGCGATGGACTATGGGATGTTTTCTCCA 715
Query 931 ATGAGGCAGCAGTTGCAATGGTTAAGGAAGTTGAAGATCCAGAGGAGTC-AGCGAAGACA 989
|||||| |||||||||| | || || |||||||||||||| || ||||| | | |||| |
Sbjct 716 ATGAGGAAGCAGTTGCAGTAGTAAAAGAAGTTGAAGATCCGGAAGAGTCCACC-AAGAAA 774
Query 990 CTTGTGGGTGAAGCAAT-AAAGAGAGGAAGTGCAGACAACATCACATGTGTTGTCGTTCG 1048
|||||||| |||||||| ||| ||||||||||||||||| || |||||||| || || ||
Sbjct 775 CTTGTGGGAGAAGCAATTAAA-AGAGGAAGTGCAGACAATATTACATGTGTAGTTGTACG 833
Query 1049 TTTCTTGGAGAAG-AAGACAGCT 1070
||||||||||| | ||| |||||
Sbjct 834 TTTCTTGGAGA-GCAAGTCAGCT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5