BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487909
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10750.1 | Symbols: | Protein of unknown function (DUF1336)... 1474 0.0
> AT5G10750.1 | Symbols: | Protein of unknown function (DUF1336)
| chr5:3398951-3400156 FORWARD LENGTH=1206
Length=1206
Score = 1474 bits (798), Expect = 0.0
Identities = 952/1023 (93%), Gaps = 23/1023 (2%)
Strand=Plus/Plus
Query 1 AAGCCATTTCCTCCGTCCCTTA-TTTTGTCACACCACACAAAGTCGTCTTTGGAGAGAGA 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 20 AAGCCATTTCCTCCGTCCCTTATTTTTGTCACACCACACAAAGTCGTCTTTGGAGAGAGA 79
Query 60 GAA-GG-----G--------------C-CA-ACCAATAAACCATGAGCCCTTCCAAGCGG 97
||| || | | || ||||||||||||||||||||||||||| |
Sbjct 80 GAAGGGCCAACGACCACACATACACACACAGACCAATAAACCATGAGCCCTTCCAAGCAG 139
Query 98 CGACATCGTAGCTCAACCGGAGAAAACAAGTCAAAACCGGTCAGATCCGGTTCATCCTCC 157
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 140 CGACATCGTAGCTCTACCGGAGAAAACAAGTCAAAGCCGGTCAGATCCGCTTCATCCTCC 199
Query 158 GCCATACCGGAATGGATTACCGAATCAACCAACGGCGGATCTCTTCGTCGCGTAGATCCC 217
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 200 GCCATACCGGAATGGATTACCGAATCAACCAACGGCGGATCTCTCCGTCGCGTAGATCCC 259
Query 218 GATACAGGTACAGACGGCTGGGCTTCTCCTCCCGGCGATGTTTTCTCTCTCCGCTCCGAT 277
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GATACAGGTACCGACGGCTGGGCTTCTCCTCCCGGCGATGTTTTCTCTCTCCGCTCCGAT 319
Query 278 TCGTACTTGACCaaaaaacaaaaaTCTCCCGCCGGAGATTACCTCCTCTCTCCCGCCGGC 337
|| |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 320 TCTTACTTGTCCAAAAAACAAAAAACTCCCGCCGGTGATTACCTCCTTTCTCCCGCCGGC 379
Query 338 ATGGACTGGCTCAAATCAAGTACCAAACTCGAGAACGTGCTCGCTCGTCCCGATAATCGT 397
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 380 ATGGACTGGCTCAAATCAAGTACCAAACTCGAGAACGCGCTCGCTCGTCCCGATAACCGT 439
Query 398 GTGGCTCACGCGCTTAGAAAAGCTCAATCTCGCGGTCAATCTCTTAAGAGCTTCATCTTC 457
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 440 GTAGCTCACGCGCTTAGAAAAGCTCAATCTCGCGGTCAATCTCTCAAGAGCTTCATCTTC 499
Query 458 GCCGTGAATCTCCAGATTCCAGGTAAAGATCATCACAGCGCCGTGTTTTACTTCGCGACG 517
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 500 GCCGTGAATCTCCAGATTCCAGGTAAGGATCATCACAGCGCCGTGTTCTACTTCGCGACG 559
Query 518 GAGGAACCGATTCCTTCCGGTTCGCTCCTCCATCGGTTCATCAACGGCGATGACGCTTTC 577
|| ||||||||||||||||||||||| ||||| ||||||||||||||||| || || |||
Sbjct 560 GAAGAACCGATTCCTTCCGGTTCGCTTCTCCACCGGTTCATCAACGGCGACGATGCCTTC 619
Query 578 CGAAACCAGAGATTCAAAATCGTGAATCGGATTGTGAAAGGTCCTTGGGTAGTGAAAGCC 637
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 620 CGGAACCAGAGATTCAAAATCGTGAATCGGATTGTGAAAGGTCCTTGGGTAGTTAAAGCC 679
Query 638 GCGGTGGGGAACTATAGCGCTTGTCTTCTAGGTAAAGCCTTGACGTGCAATTACCACAGA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GCGGTGGGGAACTATAGCGCTTGTCTTCTAGGTAAAGCCTTGACGTGCAATTACCACAGA 739
Query 698 GGTCCCAACTACTTTGAAATCGATGTCGACATTTGCAGCTCGGCGATCGCAACGGCGATC 757
||||| |||||||||||||| || ||||||||| ||||||| |||||||||||||||||
Sbjct 740 GGTCCTAACTACTTTGAAATTGACGTCGACATTAGCAGCTCAGCGATCGCAACGGCGATT 799
Query 758 CTCCGGCTAGCTTTAGGGTACGTGACGAGCGTGACGATCGATATGGGGTTCTTAGCGGAG 817
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 800 CTACGGCTGGCTTTAGGGTACGTGACGAGCGTGACAATCGATATGGGGTTCTTAGCAGAG 859
Query 818 GCGCAGACGGAAGAGGAGTTGCCGGAGAGATTAATTGGAGCTGTTAGGGTTTGTCAAATG 877
|| || |||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 860 GCACAAACGGAAGAGGAGCTGCCGGAGAGATTAATCGGAGCTGTTAGAGTTTGCCAAATG 919
Query 878 GAGATGTCGTCGGCGTTTGTGGTCGACGCGCCACCGCCGCAGCAACCGCCGTCACAACCG 937
||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct 920 GAGATGTCGTCAGCGTTTGTTGTCGACGCGCCACCACCGCAGCAACTGCCGTCACAACCG 979
Query 938 TGTAGAACATTGAGTTCGGCGAAAGTTAACCACGACGAGGACGAGGATTGAGATTAAAAC 997
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 980 TGTAGAACATTAAGTTCGGCGAAAGTTAACCATGACGAGGACGAGGATTGAGATTAAACC 1039
Query 998 ACA 1000
|||
Sbjct 1040 ACA 1042
Score = 207 bits (112), Expect = 1e-52
Identities = 124/130 (95%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1001 CTCAAAGAATGTGAAACAATTTTCATTAATCTCAATCAAATTTATATTAATCAttttttt 1060
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 CTCAAAGAATCTGAAACAATTTTCATTAATCTCAATCAAATTTATATTAATTATTTTTTT 1136
Query 1061 GTTTATGGATTTTGTAAATAATCGAGAGGTTTCATGATATATTTAATGGAATTAAATTGA 1120
||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTTAATGGATTTTGTAATTAATCAAGAGGTTTCATGATATATTTAATGGAATTAAATTGA 1196
Query 1121 AATTCGACGG 1130
| ||||||||
Sbjct 1197 AGTTCGACGG 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5