BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487913
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10790.1 | Symbols: UBP22 | ubiquitin-specific protease 22 |... 2952 0.0
> AT5G10790.1 | Symbols: UBP22 | ubiquitin-specific protease 22
| chr5:3410539-3412633 FORWARD LENGTH=1847
Length=1847
Score = 2952 bits (1598), Expect = 0.0
Identities = 1715/1772 (97%), Gaps = 5/1772 (0%)
Strand=Plus/Plus
Query 1 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AAGCGAATCTGAGTTTTGTTTTCATGTCCGCGAGGATTTCATTTCTGAAAAATCCCGATC 136
Query 61 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CGTGCAATCACTTATCTGATTATAAGCTTAGATATGGTACTGATGGTTACAAATCTTTCA 196
Query 121 ATAACTTGTTCAGATGCTTCAACGATGGAAGAATTAAGATCAAACTTCAAGGATTCGACA 180
||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct 197 ATAACTTGTTCAGATGCTTCAACGATGCAAGGATTAAGATCAAACTTCAAGGAATCGACA 256
Query 181 TACCCAGATGCAGTTATTGTTCCGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 257 TACCCAGATGCAGTTATTGTTCTGTTTATCAAAAGAGACTCTACATCTGTTTGATCTGTC 316
Query 241 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAATTGAATAAAGGCCATGATA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 317 GTTCCATTTCTTGTTCAAGTCATATCCTTTTGCATACCCAGTTGAATAAAGGCCATGATA 376
Query 301 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTACG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 377 TCGCCATTGATGTCGAAAGATCTGAGCTTTATTGCTGTGCTTGCATCGATCAAGTGTATG 436
Query 361 ATCCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTATTGGTTTGGGTATGTCTGTTA 420
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 437 ATTCTGAGTTCGACGAGGTTGTTGTGTCTAAGCAGCTTTTTGGTTTGGGTATGTCTGTTA 496
Query 421 AAGCCGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCTCAAT 480
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 497 AATCAGGGGCTGATGTTGTTGCGGTTAGATCGAACAAGAAGAGGAGATTGGACTCGCAAT 556
Query 481 TGATTATTGGGTCCAAGTTTTTGGTCTCACCTCGAGATCGGAGAGAGAAATGGACGTTTC 540
|||| || ||||| || ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 557 TGATCATAGGGTCGAATTTTTTGGTCTCACCTCGAGATCGAAGGGAGAAATGGACGTTTC 616
Query 541 CTTTGGGCTTGAGAGGTTTGAATAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 600
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 617 CTTTGGGGTTGAGAGGTTTGAACAATCTGGGAAGCACTTGTTTTATGAATGCTGTGTTGC 676
Query 601 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAGCATAATCGTG 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 677 AAGCACTTGTTCATGCTCCTCCTTTGAGAAACTTTTGGTTGAGTGGTCAACATAATCGTG 736
Query 661 ATCTTTGTCCCAGAAGAACTATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 720
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 737 ATCTTTGTCCTAGAAGAACAATGGGTTTGTTGTGTTTGCCTTGTGATCTTGATGTTATCT 796
Query 721 TCTCTGCTATGTTCTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 780
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 TCTCTGCTATGTTTTCTGGTGATCGGACTCCATATAGCCCTGCTCATTTGCTTTACAGTT 856
Query 781 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GGTGGCAGCACTCAACGAATCTAGCTACATATGAGCAGCAAGATTCTCACGAGTTCTTCA 916
Query 841 TTTCGCTATTGGACCGTATCCATGAGAATGAAGGAAAGTCGAAATGTTTGTATCAAGATC 900
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 917 TTTCGCTATTGGACCGTATCCATGAGAACGAAGGGAAGTCGAAATGTTTGTATCAAGATA 976
Query 901 ATGAGGAGTGTCAATGTATTACTCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 960
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 977 ATGAGGAGTGTCAGTGTATCACCCACAAGGCATTCTCTGGTCTTTTAAGATCAGATGTCA 1036
Query 961 CCTGCACAACATGCGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1020
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTGTACAACATGTGGATCCACATCAACAACATATGACCCGTTTATCGACATTTCACTTA 1096
Query 1021 CTTTAGATTCAGTGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 CTTTAGATTCAATGAATGGATTCTCTCCCGCTGATTGCAGAAAGAACAGATACAGTGGTG 1156
Query 1081 GACCAAGTGTGAACGCAACCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1140
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GACCAAGTGTGAACGCAATCATGCCAACTCTCTCGGGTTGCTTAGATTTCTTCACACGGT 1216
Query 1141 CAGAAAAACTTGGTCCGGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1200
|||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 CAGAGAAACTCGGTCCAGACCAGAAACTAAACTGCCAAAGCTGTGGAGAAAAGAGAGAAT 1276
Query 1201 CTTCGAAACAAATGTCAATAAGAAGACTTCCTCTGCTTCTTTGCTTGCATGTAAAGCGTT 1260
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1277 CTTCGAAACAAATGTCTATAAGAAGACTTCCTCTGCTTCTTTGCTTGCACGTAAAGCGTT 1336
Query 1261 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TCGAACATTCTCTTACCCGTAAAACCTCGAGAAAAATTGATAGCTACTTGCAGTATCCGT 1396
Query 1321 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 TCCGCCTAAACATGTCTCCTTACCTCTCTTCCTCCATCATCGGAAAGCGGTTTGGGAACA 1456
Query 1381 GAATATTTGCCTTTGATGGAGAGGGCGAGTATGACAGTTCATCATCATCATCTCCATCAG 1440
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 1457 GAATATTTGCCTTTGATGGAGAAGGTGAGTATGACAGTTCGTCATCATCATCTCCATCAG 1516
Query 1441 CGGAATTTGAGATATTTGCGGTTGTAACTCACTCAGGG-ATGTTGGAATCAGGTCACTAT 1499
|||| |||||||||||||||||||| || ||| |||| |||||||||||||||||||||
Sbjct 1517 CGGAGTTTGAGATATTTGCGGTTGTGACACACA-AGGGGATGTTGGAATCAGGTCACTAT 1575
Query 1500 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGCGATGATGCATGGATCAATGAG 1559
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1576 GTGACGTATCTGAGGCTTAAAGGGTTGTGGTATAGATGTGATGATGCATGGATCAATGAG 1635
Query 1560 GTTGAAGAAGAAGTGGTGAGAGGATGTGAATGTTACATGTTGTTCTATGCACAAGAAAGA 1619
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1636 GTTGAAGAAGAAGTGGTGAGAGGATGTGAGTGTTACATGTTGTTCTATGCACAAGAGACA 1695
Query 1620 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GTGATTCAAAAAGCTCATAAGGAGTTGAGTTATCAAGTTATCTCCATGGCTGATGCATTT 1755
Query 1680 CCCTTTGCTGATTGCTGACTCTTATTAACTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1739
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1756 CCCTTTGCTGATTGCTGACTCTTA--A-CTTGGCCAAAGATTTTGACGCATTTTCCCTTA 1812
Query 1740 ATACttttttttATTCATTTAAGGTTTATGCC 1771
|||||||||| ||| ||||||||||||||||
Sbjct 1813 CTACTTTTTTTAATTGATTTAAGGTTTATGCC 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5