BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487915
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10820.1 | Symbols: | Major facilitator superfamily protein... 2519 0.0
> AT5G10820.1 | Symbols: | Major facilitator superfamily protein
| chr5:3420827-3423221 REVERSE LENGTH=1616
Length=1616
Score = 2519 bits (1364), Expect = 0.0
Identities = 1493/1555 (96%), Gaps = 9/1555 (1%)
Strand=Plus/Plus
Query 1 TTTCAGATCCAATGTTCATCTTCTAAACAGTGAAGACCATGGAAACACTAGAAACTGAGA 60
||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 18 TTTCAGATCCAATGTTCATCTCCTAAACAGTCAACACCATGGAAACACTAGAAACTGAGA 77
Query 61 AATTCTTCTCAGACGATAAACCTCTGCTAAAACCAATTTCAGATCATTCTGAGATCAAGA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 78 AATTCTTCTCAGACGATAAACCTCTCCTAAAACCAATTTCAGATCATTCTGAGATCAAGA 137
Query 121 CATATGCAAGAAGAAACGCTGTTGTCTCAGTTCTACTTCAGCCCTTCCAATGGTTGCAAA 180
|| | ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 138 CAAAAGCAAGAAGAAACGCTGTCGTCTCAGTTCTAATTCAGCCCTTCCAATGGTTACAAA 197
Query 181 TGCTGAGTTCTAGGCTAAACCTAAGCTTTGTGCTAGGTGTGGTCCTTGTGTACGGCGTAA 240
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 198 TGCTGAGTTCTAGGCTAAACCTGAGCTTCGTGCTAGGTGTGGTCCTTGTGTACGGTGTAA 257
Query 241 ACCAAGGGTTCTCTGGTTCAATATTCAAAGTCGTCACAGACTATTACTGGAAAGATGTCC 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ACCAAGGGTTCTCTGGTTCGATATTCAAAGTCGTCACAGACTATTACTGGAAAGATGTCC 317
Query 301 AGCAAGTGCAGCCATCGGTTGTGCAGCTTTACATGGGGTTATATTACATTCCATGGGTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGCAAGTGCAGCCATCGGTTGTGCAGCTTTACATGGGGTTATATTACATTCCATGGGTCA 377
Query 361 TGAGACCTATTTGGGGTCTCTTCACCGATGTTTTCCCCATCAAAGGTTACAAAAGAAAGC 420
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 378 TGAGACCCATTTGGGGTCTCTTCACCGATGTGTTCCCTATCAAAGGTTACAAAAGAAAGC 437
Query 421 CTTATTTTGTAGTTTCTGGTGTTCTTGGTTTGGTATCTGCGATTGCTATTGCTGTTCTTG 480
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 438 CGTATTTTGTAGTTTCTGGTGTTCTTGGTTTGGTATCTGCGATTGCTATTGTTGTTCTTG 497
Query 481 GTAAGTTGCCCGCTGCTTTGGCTTTGAGCTGCCTCTTAGGTGTCTCTGCAGCTATGGCCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GTAAGTTGCCCGCTGCTTTGGCTTTGAGCTGCCTCTTAGGTGTCTCTGCAGCTATGGCCA 557
Query 541 TTGCAGATGTGGTGATTGATGCGTGTATAGCAACAAATAGCATCAATATCCGATCTTTGG 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 558 TTGCAGATGTGGTGATTGATGCGTGTATAGCAACAAACAGCATCAATATCCGATCTTTGG 617
Query 601 CCCCTGATATACAGAGCCTTTGTATGGTTTGTTCTTCTGCTGGCGCTTTGGTTGGATACG 660
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 618 CTCCTGATATACAGAGCCTTTGTATGGTTTGTTCATCTGCTGGCGCTTTGGTTGGATACG 677
Query 661 CAACTAGTGGAGTCTTTGTTCACCGGCTTGGACCACAGGGAGCATTAGGGGTGTTAGCAT 720
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 678 CAACTAGTGGAGTCTTCGTTCACCAGCTTGGACCTCAGGGAGCATTAGGGGTATTAGCAT 737
Query 721 TTTCGCCTGCAACTATCGTCATACTTGGGTTTTTCATCTACGAGAAAAGATTTTCTACTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 738 TTTCGCCTGCAACTATCGTCATACTTGGGTTTTTCATCTACGAGAAAAGATCTTCTACTG 797
Query 781 TTCTTATACAGAAAAAC-AAAAAGGACACAGATGGCTTAGGAGTAGCAGTGAAGGGAATG 839
||| || ||| ||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 TTCCTACACA-AAAGACCAAAAAGGACACAGATGGCTTAGGAGTAGCGGTGAAGGGAATG 856
Query 840 TGCAAAACAATAAAGTACCCTGAAGTGTGGAAGCCATCACTTTACATGTTCATATCCTTA 899
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 857 TGCAAAACAGTAAAGTACCCTGAAGTGTGGAAGCCATCTCTTTACATGTTCATATCCTTA 916
Query 900 GCCCTCAACATCAGCACTCATGAAGGCCACTTCTACTGGTACACTGATCCTACAGCTGGG 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GCTCTCAACATCAGCACTCATGAAGGCCACTTCTACTGGTACACTGATCCTACAGCTGGG 976
Query 960 CCCGCCTTTTCCCAGGAGTTTGTGGGAATAATCTATGC-GATCGGGGCATTGGCATCTAT 1018
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 977 CCCGCCTTTTCCCAGGAGTTTGTGGGAATAATCTATGCAG-TCGGGGCATTGGCATCTAT 1035
Query 1019 GTTTGGAGTTCTCATATACCACAAGAAGCTTAAAGGCTATTCCTTTAGGAACATACTCTT 1078
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1036 GTTTGGAGTTCTCATATATCACAAGAAGCTCAAAGGCTATTCCTTTAGGAACATACTCTT 1095
Query 1079 CTTCGCACAGCTTCTATACGTCTTCTCAGGAATGCTTGATCTAGTCTTCATCAGACGCTG 1138
||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1096 CTTTGCACAACTTCTATACGTCTTCTCAGGAATGCTTGATCTAGTCTTCATCAAACGCTG 1155
Query 1139 GAACTTAACTCTCGGGATACCAGATTCCTTGTTTGTGATAACCGAAGAATCAGTCACGAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1156 GAACTTAACTCTCGGGATACCAGATTCCTTGTTTGTGATAACCGAAGAATCTTTCACGAA 1215
Query 1199 GATAATAAGTAAGATCAGGTGGATCCCCATGGTGGTTCTCAGCACAAGGCTCTGTCCTCT 1258
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1216 GATGATAAGTAAGATCAGGTGGATCCCCATGGTGGTTCTCAGTACAAGGCTTTGTCCTCT 1275
Query 1259 GGGAATCGAAGGAACCTTCTTTGCTTTCCTCATGTGCATTGATAGTTTTGGACAACTTGC 1318
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1276 GGGAATCGAAGGCACCTTCTTTGCTTTCCTCATGTGCATTGATAGTTTTGGACAGCTTGC 1335
Query 1319 TTCTAAATGGGGTGGGGGGCTTGTTCTTCACGCTTTTGGTGTCACGAGACACGAGTTTGG 1378
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 1336 TTCTAAATGGGGTGGAGGGTTTGTTCTTCACGCTTTTGGTGTCACGAGACACGA-TTTCG 1394
Query 1379 GAA-TCTCTGGCTCGTGATTCTTATAAGGAATCTCTTGAGACTCGTCACTGTGTGTTTCG 1437
||| |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1395 GAAATCTCTGGCTCGTGATTCTGATAAGGAATATTTTGAGACTCGTCACTGTGTGTTTCG 1454
Query 1438 TTTTCCTCGTTCCAGATTCCGATCATTTGGATGATCTTGTACCCTCTGATGTGTTGCCAA 1497
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1455 TTTTCCTCGTTCCAGATTCCGATCATTTGGATGATCTTGTACCTTCTGATGTGTTGCCAA 1514
Query 1498 AGAAACAATCAGAAGATGATGATGACGAC-A-AT-AAACTTTTGCTTCTGTAAAG 1549
||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 1515 AGAAACAATCAGAAGATGATGATGATGACGACATTAAACTTTTGCTTCTGTAAAG 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76455430035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5