BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487916
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1279 0.0
> AT5G10830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:3423686-3424720
FORWARD LENGTH=902
Length=902
Score = 1279 bits (692), Expect = 0.0
Identities = 773/813 (95%), Gaps = 2/813 (0%)
Strand=Plus/Plus
Query 1 AAAGAAAAAGCAAAACACAGAGAAAATGGCAGGACTGTTTGATAAACAAGCCGATCTATA 60
|||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 21 AAAGAAGAAGCAAAACAGAGAGAAAATGGCAGGATTGTTTGATAAACAAGCCGATCTATA 80
Query 61 CCTTGACGCCAGGCCTAATTACCCCTCAGAGTGGTTCTCGAAGCTCGCTGATCTCACCGA 120
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 81 CCTTGACGCCAGACCTAATTACCCCTCTGAGTGGTTCTCGAAGCTCGCTGATCTCACCGA 140
Query 121 TCACCACGGTTTAGCCTGGGATGCTGCCACCGGCAACGGCCAAGCAGCTCTCGCCGTTGC 180
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 141 TCACCACGGTTTAGCCTGGGATGCTGCCACCGGAAATGGCCAAGCAGCTCTCGCCGTTGC 200
Query 181 AGAGCACTACGAGAGAGT-GATAGCAACGGACGTGAGCGAATCGCAGCTGAAGCTAGCAA 239
|||||| |||||||| || | |||||||||||||||| ||||||||||||||||||||||
Sbjct 201 AGAGCATTACGAGAGTGTCG-TAGCAACGGACGTGAGTGAATCGCAGCTGAAGCTAGCAA 259
Query 240 CGCCACATCCGAGGATCAGTTATCGCCATACGCCGTCCTCAATGACCGACGACGAGCTAG 299
|||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 260 CGCCACATCCGAAAATCAATTATCGCCATACGCCGACGTCAATGACCGACGACGAGCTAG 319
Query 300 TGGAATTAATCGGAGGAGAGAACTCAGTGGATCTGATCACAGTCGCTCAAGGTGTACACT 359
||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 320 TGGAATTAATCGGAGGAGAAAACTCAGTGGATCTAATCACGGTCGCCCAAGGCGTACACT 379
Query 360 GGTTCGATCTCCCTAGGTTCTACGCAGTGGCCACACGCCTTCTCCGTAAACCCGGCGGAA 419
||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||
Sbjct 380 GGTTCGATCTCCCTAGGTTCTACTCAGTGGCCACACGACTCCTCCGTAAACCAGGCGGAA 439
Query 420 TCATCGCCGTCTGGGGATACAACGACGTCATAGTGAGTCCAGAGTTCGACGCCGTCCAGT 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCATCGCTGTCTGGGGATACAACGACGTCATAGTGAGTCCAGAGTTCGACGCCGTCCAGT 499
Query 480 ATCGGTTCCACGCCACAACGCTGCCGTTTTGGAAGTATCCGTACATTCAGCACATCTTCG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ATCGGCTCCACGCCACAACGCTGCCGTTTTGGAAGTATCCGTACATTCAGCACATCTTCG 559
Query 540 ATTCGTACGAAGCATTGCCGTTTCCTTTCGAAAGTGCGGGGATGGGATCAGAAGGGAAGC 599
||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct 560 ATTCGTACGAAGCATTGCCGTTTCCTTTCGAAAATGTTGGGATGGGATCAGAAGGGGAGC 619
Query 600 CATTGAAGCTGGAGATGCCTAAAACGACGTCGTTTGAAGGGATCATAAGGATGTTCAAGT 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 620 CATTAAAGCTGGAGATGCCTAAAACGACGTCGTTTGAAGGGATCATAAGGATGTTTAAAT 679
Query 660 CATGGTCGGCTATCGTCACGGCGAGAGAGAAAGGCGTCGAGTTGTTACCGGAGAGTTTGG 719
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CATGGTCGGCCATCGTCACGGCGAGAGAGAAAGGCGTCGAGTTGTTACCGGAGAGTTTGG 739
Query 720 TGAGAGAGCTTGAGACCGCTTGGGGAAGATCTGATCTGGTTCGTTCCGTCGTTTACAAAG 779
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 740 TGAGAGAGCTTGAAACCGCTTGGGGAGGTTCTGATCTGGTTCGTTCCGTCGTTTACAAAG 799
Query 780 CTTTTATGATAGCAGGAAAAGTTAGAGTTTGAT 812
|||||||||| ||||||||||||||||||||||
Sbjct 800 CTTTTATGATTGCAGGAAAAGTTAGAGTTTGAT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40689659070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5