BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487923
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10920.1 | Symbols: | L-Aspartase-like family protein | chr... 2806 0.0
> AT5G10920.1 | Symbols: | L-Aspartase-like family protein | chr5:3441752-3444142
FORWARD LENGTH=1857
Length=1857
Score = 2806 bits (1519), Expect = 0.0
Identities = 1718/1814 (95%), Gaps = 14/1814 (1%)
Strand=Plus/Plus
Query 3 TCTTCTTCTTCTCCACCT-ACTCAATGGGAGCAATTGATCTCTCTTTCTCACAGAGTCTC 61
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 31 TCTTCTTCTCCTCCACCTAAC-CAATGGGAGCAATTGATCTCTCTTTCTCACAGAGTCTT 89
Query 62 CTCTTCTCTCCGTCGCGTTCCAATCTTTCCTCCTCCACACACCGTTCCGTCTCTTTTCTC 121
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 90 CTCTTCTCTTCGTCGCGTTCCAATCTTTCCTCCTCCACACACCGTTCCGTCTCTTTTTTG 149
Query 122 CCGCCGGGAACCAAGTCACGGTGTCTGCCGCAGTTGCGTTCAATGAGCCACGACGACGAG 181
|||||||||| |||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 150 CCGCCGGGAAGCAAGTCACGGTGTCTGCCGCCGTTGCGTTCAATGAGTCATGACGACGAC 209
Query 182 ACGGCCTCAAAGGAGGTGAAGCTATGGGGCGGAAGGTTCGAAGAGAGTGTCACTGAAAAA 241
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 210 ACGGCCTCAAAGGAGGTGAAGCTATGGGGTGGAAGGTTCGAAGAGAGTGTCACTGAGAAA 269
Query 242 GTGGAGAAGTTCACTGAGTCAATTTCATTCGATAAGGTTCTCTACAAGCAGGACATTATG 301
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 270 GTGGAGAAGTTCACTGAGTCAATTTCATTTGATAAGGTTCTCTACAAGCAGGACATTATG 329
Query 302 GGTAGCAAAGCTCATGCTACAATGCTCGCTCACCAGGGGCTAATAACTGATAGCGACAAA 361
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 330 GGTAGCAAAGCTCATGCTTCAATGCTTGCTCACCAGGGGCTAATAACTGATAGCGATAAA 389
Query 362 GATAGCATTTTGAGAGGTCTTGATGATATTGAGACACAAATTGAAGCAGATAAGTTTGAA 421
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 390 GATAGCATTTTGAGAGGTCTTGATGATATTGAGAGACAAATTGAAGCAAATAAGTTTGAA 449
Query 422 TGGAGGACTGATCGAGAAGATGTGCATATGAACATTGAGGCAGCTCTTACTGATCTTATT 481
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 450 TGGAGGACTGATCGAGAAGATGTGCATATGAACATTGAAGCAGCTCTTACTGATCTTATT 509
Query 482 GGTGAACCTGCAAAGAAACTTCACACTGCCCGGAGCAGAAATGACCAAGTTGCTACTGAT 541
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 510 GGTGAACCTGCAAAGAAACTTCATACTGCAAGGAGCAGAAATGACCAAGTTGCTACTGAC 569
Query 542 TTCAGGCTTTGGTGTCGTGATGCTATCGATACAATTATTGTCAAAATCAGAAACCTTCAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 570 TTCAGGCTTTGGTGTCGTGATGCTATCGATACAATTATTGTCAAAATCAGAAATCTTCAG 629
Query 602 -GCAGCACTAGTTGCATTGGCTTTGAAGAATGAGGCTTTGATTGTTCCTGGTTATACTCA 660
| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 AG-AGCACTTGTTGAACTGGCTTTGAAGAATGAGGCTTTGATTGTTCCTGGTTATACTCA 688
Query 661 TCTTCAAAGAGCTCAGCCTGTTTTACTCCCACACGTCCTCTTAACTTTTGTAGAGCAGCT 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 689 TCTTCAAAGAGCTCAGCCTGTTTTACTCCCACACGTTCTCTTAACTTTTGTAGAGCAGCT 748
Query 721 CGAACGTGATGCTGGTCGTTATGTGGACTGTCGAGCAAGGCTAAATTTCTCCCCCCTAGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 749 CGAACGTGATGCTGGTCGTTATGTGGACTGTCGAGCAAGGCTAAATTTCTCCCCCCTGGG 808
Query 781 AGCTTGTGCTTTGGCTGGGACTGGTCTACCTATTGATAGGTTTATGACTGCAAATGCTCT 840
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 809 AGCTTGTGCTTTGGCTGGAACTGGTCTGCCTATTGATAGGTTTATGACTGCAAATGCTCT 868
Query 841 TGGATTTACCGAACCAATGAGAAACAGTATCGATGCAGTCTCAGACCGAGATTTCGTGCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 869 TGGATTTACCGAACCAATGAGAAACAGTATCGATGCAGTCTCAGACCGAGACTTCGTGCT 928
Query 901 AGAGTTCTTATATACAAATGCCAACACAGCTATTCACTTATCACGGCTTGGAGAAGAGTG 960
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 929 GGAGTTCTTATATACAAATGCCAACACCGGTATTCATTTATCACGGCTTGGAGAAGAGTG 988
Query 961 GGTACTCTGGGCTTCCGAGGAGTTTGGTTTCCTGACTCCAAGTGATTCTGTGTCAACCGG 1020
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 989 GGTACTGTGGGCTTCCGAGGAGTTTGGGTTCATGACTCCAAGTGATTCTGTGTCAACCGG 1048
Query 1021 AAGCAGTATTATGCCACAGAAGAAAAATCCAGACCCAATGGAACTTGTCAGAGGAAAATC 1080
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 AAGTAGTATAATGCCACAGAAGAAAAATCCAGACCCAATGGAACTTGTCAGAGGAAAATC 1108
Query 1081 CGCAAGAGTCATAGGCGATCTGGTCACTGTCCTAACACTGTGCAAAGGACTTCCCCTTGC 1140
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1109 CGCAAGAGTCATAGGCGATCTGGTCACTGTCTTAACACTGTGCAAAGGACTTCCCCTTGC 1168
Query 1141 TTACAACCGAGATTTTCAAGAAGATAAAGAGCCGATGTTTGATAGTACCAAGACAATAAT 1200
||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1169 TTACAACAGAGATTTTCAAGAAGACAAAGAGCCGATGTTCGATAGTACCAAGACAATAAT 1228
Query 1201 TGGAATGATCGATGTATCTGCAGAATTTGCCCAGAATGTCACGTTCAACGAAGACAGAAT 1260
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1229 GGGAATGATCGATGTATCTGCAGAATTTGCTCAGAATGTTACATTCAACGAAGACAGAAT 1288
Query 1261 CAAGAAAAGTCTTCCTGCCGGACA-CTTGGACGCGACTACTCTCGCTGATTATCTTGTGA 1319
||||||||||||||| || ||||| ||| || ||||||||||||||||||||||||||||
Sbjct 1289 CAAGAAAAGTCTTCCCGCAGGACATCTT-GATGCGACTACTCTCGCTGATTATCTTGTGA 1347
Query 1320 AGAAGGTAATGATGCCTTTTAGGTCATCTCATGACATAGTTGGAAAACTAGTTGGAGTTT 1379
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AGAAGG---GGATGCCTTTTAGGTCATCTCATGACATAGTTGGAAAACTAGTTGGAGTTT 1404
Query 1380 GTGTCTCAAGAGGCTGTGAACTTCAGAACTTAAGTCTTGAAGAGATGAAAAAGCTGAGCC 1439
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GCGTCTCAAAAGGCTGTGAACTTCAGAACTTAAGTCTTGAAGAGATGAAAAAGCTGAGCC 1464
Query 1440 CTGTGTTTGAAGAAGATGTGTTTGGATTTTTGGGCGTTGAAAATTCAGTCAATAAGTTCA 1499
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1465 CTGTGTTTGAAGAAGATGTGTTTGGATTTTTGGGGGTTGAAAATTCAGTCAATAAGTTCA 1524
Query 1500 GTTCTTATGGGTCAACAGGATCAAACTGTGTTGATGAGCAACTTGGCTACTGGGTCAACA 1559
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1525 GTTCCTATGGGTCAACAGGATCAAACTGTGTTGCTGAGCAACTTGGCTACTGGGTCAACA 1584
Query 1560 AGCTGAACATTACTACCACCTGAGCCAGAACAAACCATTAGCAAAAGATTTGATGACATT 1619
|||| ||||||||| |||||||| || || ||||||||||||||||||||||||||| ||
Sbjct 1585 AGCTCAACATTACTTCCACCTGATCCGGACCAAACCATTAGCAAAAGATTTGATGACGTT 1644
Query 1620 TGTGTAATTTTCATATTTATTGAGGATTTTGGTCGTTAATACCAAGAAGCTTTTAAGCAA 1679
|||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||
Sbjct 1645 TGTGTAATTTTCATATTTATTGAGGATTTTTGTCGTTAATACCAGGAAGATTTCAAGCAA 1704
Query 1680 CATGTTGCAGCGGTTTGACTTTTGAGGAAGACCCAAAA-A-GTTTTGTAATATTTGAAAT 1737
|||||||||||||||||| || | | ||||| | |||||||||||||||||||
Sbjct 1705 CATGTTGCAGCGGTTTGAGAA--GACCCACAAACAAAATAAGTTTTGTAATATTTGAAAT 1762
Query 1738 CGAGGTAATGTGGAAGAGTTTGGCATTCTCCTCATTTCAAATGCTCTCTGCAATATCAAT 1797
|||| |||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||
Sbjct 1763 CGAGATAATGTGGAAGAGTTTGGTATTCTTCTCATTTCAA-TGCTCTCTACAATATCAAT 1821
Query 1798 CTTTTCATATTCTA 1811
||||| ||||||||
Sbjct 1822 CTTTTTATATTCTA 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5