BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487924
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protei... 2466 0.0
AT4G30960.1 | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-in... 272 7e-72
> AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein
kinase 5 | chr5:3445366-3447114 REVERSE LENGTH=1749
Length=1749
Score = 2466 bits (1335), Expect = 0.0
Identities = 1567/1675 (94%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 1 ATTTGCACActtcatcttcttc-t--tc---t-tcttcctctcccaaattccatggagtt 53
||||||||||||| |||||||| | || | ||||||||||||| |||||||||| ||
Sbjct 1 ATTTGCACACTTCTTCTTCTTCTTCCTCATTTCTCTTCCTCTCCCATATTCCATGGAATT 60
Query 54 tctctacttcttcACCTATGAGAGTAATCTATTCTACTCATGTACTCAAAATACTAACCA 113
||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||
Sbjct 61 GCTCTACTTCTTCACCTATGAGAGTAATATA-TC--CTCATGTACTCAAAATACTAATCA 117
Query 114 AACCTCATGGTTCAACACCACcttttcttaatcctccttcttcttcatcatcatcttctt 173
||| ||||| ||||||||||||||||||||||||| | |||||||||| | |||||||
Sbjct 118 AACTTCATGCTTCAACACCACCTTTTCTTAATCCT-C--CTTCTTCATC-T--TCTTCTT 171
Query 174 ctaatctttcattttccctaagcttcatcGGAGT-AGTATCAAATGGAGGAAGAACGGCG 232
| | | ||||||||||||| || |||| || | |||||||||||||||||||||||
Sbjct 172 CCACTATTTCATTTTCCCT-AG-----TCGGTGTAAATATCAAATGGAGGAAGAACGGCG 225
Query 233 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCGAAAGT 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 226 AGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAAGT 285
Query 293 CTATTACGGCAAAGAGATCATCGGTGGCGAGTGCGTCGCCATCAAAGTCATCAACAAGGA 352
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 286 CTATTACGGCAAAGAGATCATCGGCGGCGAGTGCGTCGCAATCAAAGTCATCAACAAGGA 345
Query 353 TCAAGTAATGAAGAGACCTGGAATGATGGAACAGATCAAACGCGAGATTTCAATCATGAA 412
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 346 TCAAGTAATGAAGAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAATCATGAA 405
Query 413 ACTCGTTCGTCATCCAAACATCGTTGAATTAAAAGAAGTCATGGCTACGAAGACGAAGAT 472
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 406 GCTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGACCAAGAT 465
Query 473 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTGTTCTGCAAAATCTCTAAAGGTAA 532
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 466 CTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATCTCTAAAGGTAA 525
Query 533 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GTTACACGAAGACGCTGCTCGTAGATATTTCCAGCAATTGATCTCAGCCGTTGATTATTG 585
Query 593 CCATAGCAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAACCTTCTTTTAGATGAGAA 652
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 586 CCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTTTTAGATGAGAA 645
Query 653 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAGCAGATTCTTCAAGA 712
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 TGGAGATTTGAAAATCTCCGATTTCGGATTATCTGCGTTACCGGAACAGATTCTTCAAGA 705
Query 713 TGGATTGCTTCATACGCAGTGTGGAACTCCGGCTTACGTTGCGCCGGAGGTTTTACGGAA 772
|||||||||||||||||||||||||||||||| || |||||||||||||| ||| |||
Sbjct 706 CGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTATTAAAGAA 765
Query 773 GAAAGGATACGACGGCGCGAAGGCGGATATCTGGTCATGCGGCGTCGTTTTGTATGTGCT 832
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct 766 GAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTCGTTTTGTATGTTCT 825
Query 833 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATATGTATCGGAAGATTTT 885
Query 893 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCGCCGGAATCGAGGCGGTTGATTTCTAA 952
||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||
Sbjct 886 CAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAGCGAGGAGGTTGATTTCGAA 945
Query 953 ACTCCTCGTCGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGACTTG 1012
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 946 ACTCCTCGTTGTAGATCCAGATCGACGGATCTCGATTCCGGCGATTATGAGAACGCCTTG 1005
Query 1013 GCTTCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1072
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GCTCCGGAAAAACTTCACTCCGCCGTTAGCTTTCAAAATCGACGAACCGATTTGTTCTCA 1065
Query 1073 GAGCAACAACAACAACGACGAAGAAGAAGAAGACGGAGATTGGGAAAATCAAACAGAGCC 1132
|||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1066 AAGCAGCAAAAACAACGAAGAAGAAGAAGAAGACGGAGATTGTGAAAATCAAACAGAGCC 1125
Query 1133 GATTTCGCCGAAGTTCTTCAACGCTTTCGAATTCATCTCCTCGATGTCTTCCGGATTCGA 1192
||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1126 GATATCGCCGAAATTCTTCAACGCTTTCGAATTCATATCCTCGATGTCTTCCGGATTTGA 1185
Query 1193 TC-TCTCAAGCTTGTTCGAGAGTAAGAGGAAAGTGCAATCGGTGTTCACGTCAAAATCGT 1251
| | || |||||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1186 -CTTATCGAGCTTGTTCGAGAGCAAGAGGAAAGTGCAATCGGTGTTTACGTCACGGTCGT 1244
Query 1252 CGGCGACGGAGCTAATGGAGAAGATCGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1311
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1245 CGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACGAAGGAGATGAACATGAAAGTGA 1304
Query 1312 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGC 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAAACGGAAGGGAGAAAAGGACGGT 1364
Query 1372 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATCTCGGTGGTGGAGTTTTGCA 1431
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1365 TGTCGATGACGGCGGAAGTGTTTGAAGTAGCGCCGGAGATATCGGTGGTGGAGTTTTGCA 1424
Query 1432 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTCCGGCCGGCGT 1491
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1425 AATCGGCGGGAGATACTTTGGAGTACGATAGGTTATACGAAGAAGAAGTACGGCCGGCGT 1484
Query 1492 TAAATGACATCGTTTGGTCATGGCACGGTGATAATAATAATAATACTTCTTCCAAGGATT 1551
|||| |||||||| |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1485 TAAACGACATCGTCTGGTCATGGCACGGTGATAATAATAACA---CTTCTTCCGAGGATT 1541
Query 1552 GTTGAATCAGGAGTGTTTGGTTCTAAGTTAACCGATTTTCGGTTAACGT--TATA--TAA 1607
|||||||||| ||| ||||||||| | ||||||| || ||||||||||| |||| |||
Sbjct 1542 GTTGAATCAGTAGTTTTTGGTTCTGATTTAACCGGTTATCGGTTAACGTAGTATAACTAA 1601
Query 1608 GGACTGTTACATTGAACCTAAATTTTCTTTGGTTTAATAAAATTTTGGTTTTACT 1662
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1602 GAACTGTTACATTGAACCCAAATTTTCTTTGGTTTAATAAAATTTTGGTTTTACT 1656
> AT4G30960.1 | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-interacting
protein 3 | chr4:15067053-15069010 FORWARD LENGTH=1958
Length=1958
Score = 272 bits (147), Expect = 7e-72
Identities = 429/558 (77%), Gaps = 48/558 (9%)
Strand=Plus/Plus
Query 371 TGGAATGATGGAACAGATCAAACGCGAGATTTCAATCATGA-AACTCGTTCGTCATCCAA 429
||| ||| | || ||||||||||| ||||| || | |||| | | || |||||||
Sbjct 536 TGGTATGGTTGATCAGATCAAACGAGAGATCTCTGTGATGAGGA-TGGTGAAACATCCAA 594
Query 430 ACATCGTTGA-ATTAAAAGAAGTCATGGCTACG-AAGA-CGAAGATCT-TCTTCGTCATG 485
||||||| || || | ||||||||||| | | || | | ||||||| | |||| ||||
Sbjct 595 ACATCGTCGAGCTT-CACGAAGTCATGGCGA-GTAA-ATCCAAGATCTAT-TTCGCCATG 650
Query 486 GAG-TTCGTTA-AAGGCGGCGAGCTGTTCTGC-AAAATCTCTAAAGGTAAG-TTACACGA 541
||| || | || |||||| ||| | ||| || || | ||||||| ||| ||| ||
Sbjct 651 GAGCTT-G-TACGAGGCGGTGAGTTATTC-GCTAAGGTGGCTAAAGG-AAGACTACGTGA 706
Query 542 AGACGCT-GCTCGTAG-ATATTTCCAGCAATTGATCTCAGCCGTTGATTAT-TGCCATAG 598
||||| | |||||| | ||||||||||||||||||||||||||||||| | || |||||
Sbjct 707 AGACG-TAGCTCGT-GTTTATTTCCAGCAATTGATCTCAGCCGTTGATT-TCTGTCATAG 763
Query 599 CAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAACCTTCTT-TTAGATGA-GAATGG- 655
| | || |||| ||| || ||||||||||| ||||| || ||| |||||||| ||| ||
Sbjct 764 CCGTGGTGTTTATCACCGAGATCTGAAACCGGAGAATCT-CTTGTTAGATGAAGAA-GGT 821
Query 656 AGATTTGAAAATCTCCGATTTCGGAT-TATCTGCGTT-ACCGGAGCAGATTCTT-CAAGA 712
| || | || | | ||||| || | | ||||| || || | |||| || |||||
Sbjct 822 A-ATCTCAAGGTGACTGATTTTGG-TCTCTCTGCTTTCACTG-AGCAT-TTGAAACAAGA 877
Query 713 TGGA-TTGCTTCATACGCAGT-GTGGAACTCCGGCTTACGTTGCGCCGGAGGTTTTACGG 770
||| || |||||||| | | |||||||||||||||| ||||||||||||||| || |
Sbjct 878 CGGACTT-CTTCATACA-ACTTGTGGAACTCCGGCTTATGTTGCGCCGGAGGTTATATTG 935
Query 771 AAGAAAGGATACGACGGCGCGAAGGCGGATATCTGGTCATGCGGCGTCGT--TTTGTATG 828
||||||||||||||||| || ||||||||| | ||||| || || || | ||| | ||
Sbjct 936 AAGAAAGGATACGACGGAGCTAAGGCGGATCTGTGGTCTTGTGGTGTTATACTTT-T-TG 993
Query 829 TGCTTCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCT-GATGAATATGTATCGGAAG 887
||||||| || || | |||||||||||||||||| ||||| | ||||||||||| |||||
Sbjct 994 TGCTTCTTGCTGGTTATTTGCCGTTTCAAGATGATAATCTTG-TGAATATGTATAGGAAG 1052
Query 888 ATTTTCAGAGCG-GATTT 904
|||| ||||| | |||||
Sbjct 1053 ATTTACAGAG-GAGATTT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5